Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq121238 183 3e-41 seq2515 107 2e-18 seq54613 98.7 1e-15 seq55701 89.7 5e-13 seq37844 87.8 2e-12 seq110694 84.2 2e-11 seq54614 84.2 2e-11 >seq121238 Length=2101 Score = 183 bits (202), Expect = 3e-41 Identities = 674/1030 (65%), Gaps = 42/1030 (4%) Strand=Plus/Plus Query 20330 CAATCTGCCGGTAATCGACCACACCGTCTTCCCAAGTGCCGGCGACGGGACCGGTGGCCG 20389 |||| | || ||| |||||||| ||||||| |||||| || ||| || || || || Sbjct 394 CAATTTCCCTGTAGTCGACCACTCCGTCTTGCCAAGTACCCTTGACAGGTCCAGTAGCGT 453 Query 20390 TGCCCGCGAAAGGATTATCACTATCGC--TCTTCA-CACCGGTCCAACCGCGCCCGTACA 20446 |||| | ||| ||||| | ||| || | | | || |||||||| || || |||| Sbjct 454 TGCCTGTGAAGGGATTGTTGTCTTCGTAATCATGAACTCCAGTCCAACCACGACCATACA 513 Query 20447 TTGCTACACCCAGTGCAATTTTACTT----TTTGGTACGTGTTGCGCGAGCAACGCTTCT 20502 | || ||||| | | |||| || ||| || | | ||| || | ||| || | Sbjct 514 TGGCAACACCTACTACAATCTT-CTTAGGATTCACTCCCTGT---GCTAACAAGTATTTT 569 Query 20503 ACGGCACGATCTGCGCAATAAGGTTCGTCGGGTTTCCAGGCGGGTGCAAACAATGCGGTT 20562 || | || | |||| ||| | ||| ||||| || || || |||||| ||| Sbjct 570 ACTCCGAAGTCAGAAGTGTAAGTTTCCTTGGGGTTCCATGCAGGCGCGTACAATGGTGTT 629 Query 20563 TGATGTCCCAGATCCGTAGTGGACCAGGCTCCTTTGAAATCGTACGACATTAAGAATATG 20622 |||||||| ||| | | |||||||| |||||||| ||||| ||| ||||| || Sbjct 630 TGATGTCCAAGAGTATCATTTGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATA 689 Query 20623 GTATCGAGGTATTTTTGCGCTTCGGTGTAATCGACCACAGCAATCTTATCGTCGCCCGCG 20682 ||| | || ||||| || | | |||| || || || || ||||| || ||| Sbjct 690 TGATCCATATAATTTTGAGCCTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCG 749 Query 20683 CTTATCGCGCTCGTCAACAGATAGTA---ACGATTGTGATGTATGCCGAGGG--CGTCGA 20737 || || || || || || | || ||| | | || ||| | | |||| Sbjct 750 CTAATAGCAGAAGTTAATTCGTATTTCTTACCATTCTTA-----GCTGAGAGTTCATCGA 804 Query 20738 GCATGCCGCGAAGTTCACGCAGCAGGATCGTGTACGTGGCTCGATCGCGTTC-GGCGTCG 20796 |||| | || | ||| || || | || | | ||| ||| || || Sbjct 805 GCATCTCACGTAATTCTTTCATCAAACTTACATAACAATCACCATC---TTCTGGACTC- 860 Query 20797 CCGACATTGGGGTTCGCGCCATTGCCGCCCGGAAACTCCCAATCAATGTCGACGCCATCA 20856 || | | ||||| ||||| ||||| || || ||||||||||| || || || ||||| Sbjct 861 CCAAGGTCAGGGTTAGCGCCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCG 920 Query 20857 AAGAATTTCCACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CGT-TTGGCGCACGA 20914 ||||||||||| ||| ||| |||| | ||| || | | ||| ||| || | | || Sbjct 921 AAGAATTTCCATGTTAAAAGAAACTCCTTGACTGACTGCACAAATCGTGTTCTCTTA-GA 979 Query 20915 TCTTGTCGTGCATATGGAAAAATGGGTCCGAAAGTGTCCAGCCCCCGATAGACGGTAACA 20974 | ||||| | | ||| ||||| || | ||| ||||| || || ||||| || | | Sbjct 980 T-TTGTCAACGAAAAAGAAGAATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAA 1038 Query 20975 CTTTGAGATGCGGGTTCGCCAATTTCGCG-GCCATAAGTTGGCCAAAGTTGCCTTTGTAC 21033 || | || ||||| | | || | | | ||| | ||||||||| ||||||||||| Sbjct 1039 TCTTCAAAT-CGGGTCGGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTAG 1097 Query 21034 GGTTCGTTCCATGCGCTGACA--CCTTTCTGGGGTTTCTGTATGGCCGCCCACGGATCGT 21091 ||||| |||||| | |||| ||| | || ||||| |||| || ||||| ||||| | Sbjct 1098 GGTTCATTCCAT--GAAGACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCAT 1155 Query 21092 GAATGGCCACCTTAAAGTCGGCACGGCCCGCGCACGAACGTTGCAACGCTTCGAAACTGC 21151 | || | || || || || | ||||| || || || || || |||| |||||||| Sbjct 1156 GGATTGAGACTTTGAAATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGC 1215 Query 21152 CCGGGA-CACTTTTGAGCGCATCGTTGATGCCTTCGCCTCCGCACATGGGCACGAAACCG 21210 | || | ||||| ||| || ||||| || || || ||||| || || | ||| ||| Sbjct 1216 CTTCGATCTCTTTTAAGC-TGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCG 1274 Query 21211 TACAACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGGCGCGGATAC 21270 || | | ||| | | || ||| | || | ||| || || || | | ||||| Sbjct 1275 TAGAGTAGATGAGTAAGATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATAA 1334 Query 21271 ACACCCCATTCGACAAAGTATGCTCCAATGATCTTGTCCGAGCGCTTT--TCGAAACGTT 21328 ||||||||||| || || || || || | | ||| ||| || | ||| | ||| | | Sbjct 1335 ACACCCCATTCTACGAAATAAGCACCCA-CAACTTTTCC-AGAGGTTTGCTTGAATGGCT 1392 Query 21329 TATTGTTTTC 21338 |||| ||||| Sbjct 1393 TATTTTTTTC 1402 >seq2515 Length=4501 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || || || ||||||||||||||||| || ||| | || | ||||| ||||| ||||| Sbjct 3663 GTGGATTCCTTTTGAATGTTATAATCAGACAATGTACGTCCA-TCTTCTAGCTGCTTACC 3605 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||||| |||||||| || || || || ||||| || || ||| || ||| Sbjct 3604 AGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTAGCTTT 3545 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | ||| | || || | || |||||||||| ||| | || || || || | || Sbjct 3544 TACATTTTCAATAGTATCAGAGGCTTCCACCTCAAGGGTAATGGTTTTACCCGTAAGGGT 3485 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 3484 CTTGACGAAAATTTGCAT 3467 >seq54613 Length=3623 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||||| || | |||| || || ||||||||||| ||||| || Sbjct 3573 GCCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGA 3514 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| ||||| | || ||||||||| |||| ||||| |||||||| || || Sbjct 3513 TAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 3454 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| |||||| ||||| | ||| | ||| || | || || || Sbjct 3453 GATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAAC 3394 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | || || || || | || ||||| || || |||||| || Sbjct 3393 TTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCATACCT 3342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139571 GACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCA 139630 || ||||||||||| || || || | ||||| ||||| | || ||||||||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690 |||| ||||| |||||||| || || ||||| |||||||| |||||| ||||| Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750 | ||| | ||| || | || || || || | || | || || || || | || ||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 139751 ACGAATATTTGCATAGCT 139768 || || || |||||| || Sbjct 2900 ACAAAGATCTGCATACCT 2883 >seq55701 Length=1651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| |||||||| | || || || || ||||| ||||| || || ||| | | Sbjct 310 CGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACGCCCA 369 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || || || || || | || || | ||| ||||| ||||| ||||| |||||| Sbjct 370 TCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTCTTTG 429 Query 139670 TCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | |||| |||| | || | ||| || | | ||||| || | || | Sbjct 430 TCC-TGAATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGAT 488 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || ||||| || ||||||||||| |||||||| Sbjct 489 GGTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCAT 524 >seq37844 Length=1442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | |||||| || ||||| | ||||||||||| ||||| || || ||| Sbjct 284 CCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCG 225 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || ||||| |||||||| | || |||||||| || || ||||| Sbjct 224 AGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGA 165 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||| || ||| | | ||| | ||||| | || || || Sbjct 164 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAACT 105 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || || | || ||||| || || |||||| Sbjct 104 TCTAATGTGATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCATA 57 >seq110694 Length=236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||||||| |||||||| | || || || || || || ||||| || | Sbjct 55 CCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCAGAC 114 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||||| || || |||||| | ||||| | || || || ||||| Sbjct 115 AATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGAGGA 174 Query 139658 ATGCCTTCTTTGTC 139671 || ||||||||||| Sbjct 175 ATACCTTCTTTGTC 188 >seq54614 Length=296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | |||||| || ||||| | ||||||||||| ||||| || || ||| Sbjct 106 CCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCG 165 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || || ||||| ||||||||| | || |||||||| || || ||||| Sbjct 166 AGCGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGGTCTGGAGGA 225 Query 139658 ATGCCTTCTTTGTC 139671 || || |||||||| Sbjct 226 ATACCCTCTTTGTC 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493858121207200