Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq7548 536 2e-147 seq52122 100 4e-16 seq139650 95.1 2e-14 seq105385 86.0 9e-12 >seq7548 Length=2633 Score = 536 bits (594), Expect = 2e-147 Identities = 1211/1797 (67%), Gaps = 41/1797 (2%) Strand=Plus/Minus Query 78700 ATCTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 78759 || ||| | ||||| | ||||| || || | | | ||| ||||| || |||| ||| Sbjct 2257 ATTTTACCTTTGTCTACGGTGAACTGTATAGCATTTGCTGCCGGTTTTGTGCGTAAGTAG 2198 Query 78760 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAA 78819 |||||||| ||||||| || | |||| ||| |||||| || ||||||||| | Sbjct 2197 TACATTCCTGTTTTTAAGCCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 2138 Query 78820 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 78879 || | || | || | ||| || || | |||||||||||| || ||||| ||||| || Sbjct 2137 TAGTTAGGCTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATGAAAGCTCCTCTA 2078 Query 78880 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 78938 || || ||||||| |||| ||| || || ||| ||||| | ||||| || || || Sbjct 2077 TCAGCCGCCATTTGTATGGACGTTTTCAATGAAATCTCCCATACGGTTTTGTACAAATCT 2018 Query 78939 CTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATCCT 78995 |||| | |||| |||| ||| | |||| | || ||||| | | ||| Sbjct 2017 CTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCGTTGTTGTATAAAATAAG 1959 Query 78996 ATTCTTGATCTCTTCATTCCATAATTTT-CTCTCGGTTAAAACTCTAAGGAGATGCGGAT 79054 ||| || || ||||||| |||||| | |||| ||| ||| || | || || || ||| Sbjct 1958 ATTTTTCATATCTTCATCCCATAAATCGGCTCT-GGTCAAATCTGTCAGAAGGTGATGAT 1900 Query 79055 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTT 79114 | ||||| ||||||||||||| || ||||| | |||||| || ||| | |||| Sbjct 1899 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATGTTTGATGTAAAGGGTT 1840 Query 79115 CCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCA 79174 | | || ||| | || || | |||||| || || || || ||||||||||| || | || Sbjct 1839 CAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATAGGAGCTAACA 1780 Query 79175 ATAAACTATTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATTCCCAATCCCA 79232 ||| | ||| | | ||| ||| | || ||||| ||||| || | |||| ||||| Sbjct 1779 ATAGAGAATTGCGCAAACC--ATGTTTTGCTATTTTTTCTTTGAGGGCAGCCCAGTCCCA 1722 Query 79233 AAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGA 79292 || || | || | ||| | |||||||||||| ||||| | || | Sbjct 1721 CAGTTCCGTAGGAGTTTTGTCCCACATATCATATTGTAGGATACCTTGGCTCACTGGACT 1662 Query 79293 TCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGC 79352 ||| || || || | ||||| ||||| |||||||||||||| || |||||||| Sbjct 1661 CCCTTCATAAGTACTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGC 1602 Query 79353 TCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAA 79412 || |||||||| ||||| || || | | ||| || | ||||| || || | Sbjct 1601 ACCATAATAAATAGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGTA 1542 Query 79413 TGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 79471 || || | | | | | ||| | ||||| | ||| |||||||||||||||||||| | Sbjct 1541 AGG-TATTCTCATCAACACAAATGTATCTGCCATTCCCTGAACACCAATACCGATAGGCC 1483 Query 79472 TATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 79531 || || |||| ||| ||| ||||| || | ||||||| | |||| ||| || | || Sbjct 1482 GGTGCTTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTT 1423 Query 79532 TATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC 79588 | || | ||| |||| ||| | ||| || |||| ||| ||||| |||| Sbjct 1422 TGTTTAAATTTTGAGTGACAATTTTTGTGATT---TCTTTTAATTTTTTAAAATTAAATT 1366 Query 79589 GTCCATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT 79648 | || | ||||||||||| | || | || || ||||| || || || || |||| Sbjct 1365 GCTTATGTTCAACAAACATGTTAAGTGCTATGGAAGCAAGATTGCATACTGCCACTTCAT 1306 Query 79649 TAGCATCCGCA---TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTA 79705 | || | | ||||| | | |||||||| || || ||||| ||||| || || | Sbjct 1305 ---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAA 1249 Query 79706 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAG 79765 ||| | |||||||||||| ||||||| ||||||||||| | ||| | || ||||||| Sbjct 1248 GATTCTTTTGATTACTCTTCCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAG 1189 Query 79766 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-CT---TTATTATAGAC 79821 | || | || | ||||||||| | ||||| | || |||| || || || || | Sbjct 1188 TCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTTGTTTTATAA 1129 Query 79822 TTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACA 79881 ||| |||||| |||| |||| | ||||| | ||| ||||| ||||| | Sbjct 1128 ----ATCGTTTTTCTTTTTCATATTTGGCATATAGTTCTTCAAACTCCTCTCCATAGCAG 1073 Query 79882 TCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACT 79941 || | | |||||||| || | ||||||||| | ||| || |||| | | |||| Sbjct 1072 TCAGCGAGACCAGGACAGTCATGAGGACACATTAGACTCCAAACTTCATCCTTTTCTACT 1013 Query 79942 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCC 80001 | ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| || Sbjct 1012 CTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCT 953 Query 80002 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 80061 || || ||||| ||||| | | ||| | |||| | | || || | |||||| || || Sbjct 952 TCCTTACCTGTGTTCTTCCTTAAATCTAAGAACTCAAATATGTCTGCATGCCAAGGCTCT 893 Query 80062 AAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 80121 ||||| || || | | || || ||||||||||| || ||||||| ||||| || || Sbjct 892 AAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTA 833 Query 80122 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATA 80181 || ||||| |||||||||||||| | | |||||| || ||||| || || | ||| Sbjct 832 TTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATA 773 Query 80182 TAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 80238 || || ||| | || || || || || |||||| || || || |||| Sbjct 772 TAAGAACCCTGGGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGATTTA 716 Query 80239 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATG 80298 || ||||| || ||| ||||||| |||||| | ||||| || |||||||| || |||| Sbjct 715 GAAATTAAAGCACATTGTTTTAAAGTATCAAAAATGCCTTCAATGCTATCGTCTTTCATA 656 Query 80299 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 80358 | || || ||| || | || | || || | || || | ||||| Sbjct 655 GCTATAAGGAAGCAGGAGGAAAGCTGTGGCCGCGGTGTAGCTGCTGAGAACAGTGTAGGG 596 Query 80359 GAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATA 80418 || || ||||| |||| || |||| | ||| || || | || || || || Sbjct 595 CTTGCATGTGTAAAATATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATG 536 Query 80419 TC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 80474 || || | ||||| |||| | ||| | ||||| |||||| |||||||||||||| Sbjct 535 TCTTCACCG-TGAATGCCTATGGAGACTCTCATTAGCATGTGTTGAGGTCTTTCAAC 480 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 80478 CTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 ||| || ||||| || ||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 210 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 151 Query 80538 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 80588 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 150 TTTAAAATCTCTGTCATAAACAATGGCAGAGTCCAATTTGTCCTTGTTTTT 100 >seq52122 Length=5755 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 ||||||| ||||||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 5436 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAAGGATGCTTCAGCTTTTTTATACATCTGC 5377 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 || ||||| |||||||||||||||| ||||| || Sbjct 5376 CAAATGTCTGGATATTGGATTGGGAATATAACGAA 5342 >seq139650 Length=2376 Score = 95.1 bits (104), Expect = 2e-14 Identities = 244/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 173691 TTATGACTCCA--ATTAATCCCATGTTAGCAGAATCATGTGATTCTGTCAATAAGGCGTT 173748 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 489 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 432 Query 173749 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 173808 ||||||| |||| || |||||| | ||| | ||||| ||||| ||| | || ||||| Sbjct 431 GAAAAAATGTCCAAATGGCATGTTTTCTGAAATAAAATATGATGGAGAACGGGTTCAAGT 372 Query 173809 TCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 173868 |||||||| || ||||| | ||| | | | ||||||||| | |||| Sbjct 371 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 312 Query 173869 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCAT 173928 ||||| | || | ||||| || |||| || |||||| |||| | | || Sbjct 311 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAGGCATTTCCTAAAGGAGATGATTTGAT 252 Query 173929 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTA---CCGCTACCGTTTGGAAG 173985 |||||| ||||| | || | ||||| | ||| || | || | || ||||| | Sbjct 251 TTTGGATGCTGAAGTACTTATGGTAGATGTCAATACTGGAAAGCCATTGCCTTTTGGTAC 192 Query 173986 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 174045 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 191 ATTAGGTATCCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 132 Query 174046 CTGTTTGTA 174054 || || || Sbjct 131 TTGCTTATA 123 >seq105385 Length=1203 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 80689 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 || || || || || |||| ||| |||| ||||||||||| || ||||| |||||||| Sbjct 558 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATAGCATAATCA 617 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 ||||| | || || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 618 GGATGATCAGTGGTCTTAGTAGCTGCAATTTCAGCAGCAAGATTATCAAGCTCAGCAGTT 677 Query 80809 GTTACTCCATTATATATTCC 80828 ||||| ||| |||||| || Sbjct 678 GTTACACCAGAATATATGCC 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715074829235240