Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq49004 123 2e-23 seq52122 87.8 2e-12 >seq49004 Length=3997 Score = 123 bits (136), Expect = 2e-23 Identities = 113/141 (80%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 ||||||| ||| ||||||||| || ||||| || ||||| ||||||| |||||||| Sbjct 311 CCTCATCCCTAGAAATAAGTTCATTGCTGAAA--GTCAATCCGGGCATCAGACCTCGTTT 254 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 ||| ||||||||||||| |||||| || || || |||||||||||||| || ||||| Sbjct 253 TTTCAACCAAAATATTGAAGCAAAGCTGCCCGAGAAAAATATTCCCTCAACCGCCGCAAA 194 Query 14012 CGCTATTAATCGTTCTCCAAA 14032 || |||| |||||| |||| Sbjct 193 AGCGATTATACGTTCTGCAAA 173 >seq52122 Length=5755 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 14184 TTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAG 14243 |||||||| || || ||||||||||||||||| || ||||| | | ||| || || Sbjct 5746 TTTTCCATGGCAATTTGAAAACCATAAAAGCACCTGGCTTCGGTCACTTGAACCTCTTGT 5687 Query 14244 TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAAT 14303 | || | || |||| || |||||||| ||||||||| |||||| || ||||| || Sbjct 5686 GAGAACCGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCGAAGAATGCTAAG 5627 Query 14304 ATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCT 14361 | | || ||||| | || ||| || || | | | | |||||| | ||| |||| Sbjct 5626 ACATGCTTGATAAAATGTTTCTCACAATCTTTTAATGTCTCCCAATCTGCTAAGTCCT 5569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477594763519400