Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq49004 118 1e-21 seq52122 96.9 3e-15 >seq49004 Length=3997 Score = 118 bits (130), Expect = 1e-21 Identities = 112/141 (79%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13739 ||||||| ||| ||||||||| || ||||| || ||||| ||||||| |||||||| Sbjct 311 CCTCATCCCTAGAAATAAGTTCATTGCTGAAA--GTCAATCCGGGCATCAGACCTCGTTT 254 Query 13740 ttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 13799 ||| ||||||||||||| ||| || || || || |||||||||||||| || ||||| Sbjct 253 TTTCAACCAAAATATTGAAGCAAAGCTGCCCGAGAAAAATATTCCCTCAACCGCCGCAAA 194 Query 13800 CGCTATTAGTCGTTCTCCAAA 13820 || |||| |||||| |||| Sbjct 193 AGCGATTATACGTTCTGCAAA 173 >seq52122 Length=5755 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 13972 TTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAG 14031 ||||| || || || |||||||||||||| || || ||||| | | ||| ||||| Sbjct 5746 TTTTCCATGGCAATTTGAAAACCATAAAAGCACCTGGCTTCGGTCACTTGAACCTCTTGT 5687 Query 14032 TAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAAT 14091 | || | || ||||||| |||||||||||||||||| |||||| || ||||| || Sbjct 5686 GAGAACCGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCGAAGAATGCTAAG 5627 Query 14092 ATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCT 14149 | | || ||||| | || ||| || || | | | | |||||| ||||| |||| Sbjct 5626 ACATGCTTGATAAAATGTTTCTCACAATCTTTTAATGTCTCCCAATCTGCTAAGTCCT 5569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476460629271240