Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq7548 524 1e-143 seq52122 100 4e-16 seq139650 89.7 7e-13 >seq7548 Length=2633 Score = 524 bits (580), Expect = 1e-143 Identities = 1098/1622 (68%), Gaps = 30/1622 (2%) Strand=Plus/Minus Query 70776 CGGTTTTATTTTTTCCTT-GTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTAC 70834 || || || |||| |||| ||| | || ||||| || | | | ||| | ||| || | Sbjct 2265 CGTTTGTAATTTTACCTTTGTCTACGGTGAACTGTATAGCATTTGCTGCCGGTTTTGTGC 2206 Query 70835 GTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTA 70894 ||| |||||||| |||||||||| || | |||| ||| ||||| || ||||| Sbjct 2205 GTAAGTAGTACATTCCTGTTTTTAAGCCCATTTTCCAAGCGTGGAAATGAATCGACGTTA 2146 Query 70895 GTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGG 70954 |||| |||| |||| | || | || || || | || |||||||| || ||||| | Sbjct 2145 GTTTCCCATAGTTAGGCTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATGAAAG 2086 Query 70955 CTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTAT 71014 |||| || || || ||||||| |||| ||| || || ||| ||||| | ||||| | Sbjct 2085 CTCCTCTATCAGCCGCCATTTGTATGGACGTTTTCAATGAAATCTCCCATACGGTTTTGT 2026 Query 71015 A-AACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCA 71070 | || || |||| | |||| |||| ||| | |||| | || ||||| | || | Sbjct 2025 ACAAATCTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCGTTGT-TGTA 1968 Query 71071 -ATAATCCTATTTTTGATCTCTTCATTCCATAATTTT-CTCTCGGTTAAAACTCTAAGGA 71128 | ||| |||||| || ||||||| |||||| | |||| ||| ||| || | || | Sbjct 1967 TAAAATAAGATTTTTCATATCTTCATCCCATAAATCGGCTCT-GGTCAAATCTGTCAGAA 1909 Query 71129 GATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGG 71188 | ||| |||| ||||| ||||||||||||| || ||||| | |||||| || | Sbjct 1908 GGTGATGATTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATGTTTGATG 1849 Query 71189 TATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAG 71248 || | ||||| | |||||| | || || | |||||| || || || || || ||||||| Sbjct 1848 TAAAGGGTTCAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATAG 1789 Query 71249 GTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCC 71308 | || | ||||||| ||| | | ||||||| | ||||| ||||| || | ||| Sbjct 1788 GAGCTAACAATAGAGAATTGCGCAAACCATGTTTTGCTATTTTTTCTTTGAGGGCAGCCC 1729 Query 71309 AATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAG 71368 | | ||| || |||| || || || | || Sbjct 1728 AGTCCCACAGTTCCGTAGGAGTTTTGTCCCACATATCATATTGTAGGATACCTTGGCTCA 1669 Query 71369 CGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCT 71428 | ||| |||| ||| ||||| ||||||||||| |||| ||||||||| || | Sbjct 1668 CTGGACTCCCTTCATAAGTACTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTT 1609 Query 71429 CTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGC 71488 ||||||| ||||||||||| ||||| || || | | ||| || | ||||| | | Sbjct 1608 CTAATGCACCATAATAAATAGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCAC 1549 Query 71489 TATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCG 71547 | || | || || | | | | | ||| | ||||| | ||| ||||| ||||||||| Sbjct 1548 TTTCGTAAGG-TATTCTCATCAACACAAATGTATCTGCCATTCCCTGAACACCAATACCG 1490 Query 71548 ATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 71607 ||||| | ||| || |||| ||| ||| ||||| || | ||||||| | |||| ||| Sbjct 1489 ATAGGCCGGTGCTTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCA 1430 Query 71608 ATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAA 71664 || | ||| || | |||| |||| ||| | ||| || |||| ||| |||| Sbjct 1429 ATGACTTTGTTTAAATTTTGAGTGACAATTTTTGTGATT---TCTTTTAATTTTTTAAAA 1373 Query 71665 TCAAATCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCT 71724 | |||| | || | ||||||| ||| | || | || || ||||| || || || Sbjct 1372 TTAAATTGCTTATGTTCAACAAACATGTTAAGTGCTATGGAAGCAAGATTGCATACTGCC 1313 Query 71725 ACCTCATTAGCATCGGCA---TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATG 71781 || |||| | || | | ||||| | || |||||||||||||| ||||| || || Sbjct 1312 ACTTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATA 1256 Query 71782 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGA 71841 || || | ||| | |||||||||||| ||||||| ||||||||||| | || | || Sbjct 1255 GTGCCAAGATTCTTTTGATTACTCTTCCTGTTACAAGCATCCTTATACAACATGTATGGT 1196 Query 71842 GTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA 71901 |||||||| || | || | ||||||||| | ||||| | || |||| | | | Sbjct 1195 GTACCAGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTTGT 1136 Query 71902 TTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAA 71961 || | ||| |||||| |||| |||| | ||||| | ||| ||||| ||||| | Sbjct 1135 TTTATAAATCGTTTTTCTTTTTCATATTTGGCATATAGTTCTTCAAACTCCTCTCCATA- 1077 Query 71962 GCATTGT-CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATT 72020 ||| | | | |||||||| |||| |||||||| | ||| || |||| | | Sbjct 1076 GCAGTCAGCGAGACCAGGACAGTCATGAGGACACATTAGACTCCAAACTTCATCCTTTTC 1017 Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 ||||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| Sbjct 1016 TACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCAT 957 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 || || || ||||| ||||| | | ||| | |||| | | || || | |||||| || Sbjct 956 TTCTTCCTTACCTGTGTTCTTCCTTAAATCTAAGAACTCAAATATGTCTGCATGCCAAGG 897 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 || ||||| || || | | || || ||||||||||| || ||||||| ||||| || Sbjct 896 CTCTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGC 837 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 || || ||||| |||||||||||||| | | |||||| || | ||||| || || | Sbjct 836 AGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGC 777 Query 72261 GATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 ||||| || ||| | || | || || || |||||| || || || | Sbjct 776 TATATAAGAACCCTGGGCTCTGATGCAATGTGTAT--GTAAACCTATGCCACCAGCAGAT 719 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 ||||| ||||| || ||| ||||||| |||||| | ||||| || || ||||| || || Sbjct 718 TTAGAAATTAAAGCACATTGTTTTAAAGTATCAAAAATGCCTTCAATGCTATCGTCTTTC 659 Query 72379 AT 72380 || Sbjct 658 AT 657 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 ||| || ||||| || ||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 210 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 151 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTT 72671 | ||| |||| || |||| ||| | || | | ||| ||||| | ||| Sbjct 150 TTTAAAATCTCTGTCATAAACAATGGCAGAGTCCAATTTGTCCTTGTTTTT 100 >seq52122 Length=5755 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 ||||||| |||||||||||| | |||||||| |||||||| || ||||||||||| | | Sbjct 5436 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAAGGATGCTTCAGCTTTTTTATACATCTGC 5377 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || || || ||||||| |||||||| ||||| || Sbjct 5376 CAAATGTCTGGATATTGGATTGGGAATATAACGAA 5342 >seq139650 Length=2376 Score = 89.7 bits (98), Expect = 7e-13 Identities = 220/331 (66%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 165040 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCGTT 165097 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 489 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 432 Query 165098 TAAAAAATTTCCATCAGGAATGTTTGCGGAAGTCAAATACGATGGTGAAAGAGTACAAGT 165157 ||||||| |||| || |||||| | ||| | ||||| ||||| ||| | || ||||| Sbjct 431 GAAAAAATGTCCAAATGGCATGTTTTCTGAAATAAAATATGATGGAGAACGGGTTCAAGT 372 Query 165158 TCATaaaaaaaaTAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTCA 165217 |||||||| || ||||| | ||| | | | ||||||||| | |||| Sbjct 371 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 312 Query 165218 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 165277 ||||| | || | ||||| || |||| || |||||| |||| | | | Sbjct 311 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAGGCATTTCCTAAAGGAGATGATTTGAT 252 Query 165278 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTA---CCGCTACCGTTTGGAAG 165334 |||||| ||||| | || | ||||| | ||| || | || | || ||||| | Sbjct 251 TTTGGATGCTGAAGTACTTATGGTAGATGTCAATACTGGAAAGCCATTGCCTTTTGGTAC 192 Query 165335 TTTAGGTATACACAAAAAGAAAGAATATAAA 165365 |||||||| |||||| | ||||| |||| Sbjct 191 ATTAGGTATCCACAAACAATCAGAATTTAAA 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668154803373160