Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq121238 199 4e-46 seq54613 116 4e-21 seq55701 89.7 5e-13 seq110694 84.2 2e-11 >seq121238 Length=2101 Score = 199 bits (220), Expect = 4e-46 Identities = 372/538 (69%), Gaps = 10/538 (2%) Strand=Plus/Plus Query 19411 GGGTTCGCGCCATTGCCGCCTGGAAACTCCCAATCGATATCGACGCCATCGAAGAATTTC 19470 ||||| ||||| ||||| || || ||||||||||||||||| || ||||||||||||||| Sbjct 870 GGGTTAGCGCCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTC 929 Query 19471 CACGTTTCTAGATACTCTTGGACCGAATCGATAAA-CGTCTGCCGTACGCTCTTGTCGTG 19529 || ||| ||| |||| | ||| || | | ||| ||| | | | | | ||||| Sbjct 930 CATGTTAAAAGAAACTCCTTGACTGACTGCACAAATCGTGTTCTCTTAGAT-TTGTCAAC 988 Query 19530 CATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATG 19589 | | | | ||||| || | ||| ||||| || || || || || || | || | || Sbjct 989 GAAAAAGAAGAATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAATC 1048 Query 19590 AGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 19649 || || |||| | ||| | ||||||||| ||||||||||| ||||| ||||| Sbjct 1049 GGGTCGGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCA 1108 Query 19650 TGCGCTGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACT 19707 | | |||| ||| |||| ||||| |||| || ||||| ||||| || || | ||| Sbjct 1109 T--GAAGACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACT 1166 Query 19708 TTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTT 19767 ||||| || | || ||| ||| || || || || |||| ||||||||| || | Sbjct 1167 TTGAAATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCGATCTCT 1226 Query 19768 TTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGC 19827 || | | |||||||| ||||| || ||||| || || | ||| ||||| | | ||| Sbjct 1227 TTTAAGCTGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATGA 1286 Query 19828 GACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCG 19887 | | || ||| | || | ||| || || || | | ||||| ||||||||||| Sbjct 1287 GTAAGATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATAAACACCCCATTCT 1346 Query 19888 ACAAAGTATGCACCTATGATCTTGTCCGAGCGCTTT--TCGAACCGTTTATTGTTTTC 19943 || || || ||||| | | ||| ||| || | ||| | ||| | ||||| ||||| Sbjct 1347 ACGAAATAAGCACCCA-CAACTTTTCC-AGAGGTTTGCTTGAATGGCTTATTTTTTTC 1402 >seq54613 Length=3623 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||||||||| | ||||| || | ||||| || ||||||||||| || || || || Sbjct 3573 GCCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGA 3514 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| ||||| | ||| ||||||||| |||| ||||| |||||||| || || Sbjct 3513 TAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 3454 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||||| ||||| | ||| | || || | || ||| || Sbjct 3453 GATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAAC 3394 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| | ||| | || || || || | ||| ||||| || || |||||| || Sbjct 3393 TTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCATACCT 3342 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142991 GATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCA 143050 ||||||||||| || ||||| || | ||||| ||||| | ||| ||||||||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 143051 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC 143110 |||| ||||| |||||||| || || ||||| |||||||| ||||| ||||| Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 143111 TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTT 143170 | ||| | || || | || ||| ||||| | ||| | || || || || | ||| ||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 143171 ACGAATATTTGCATAGCT 143188 || || || |||||| || Sbjct 2900 ACAAAGATCTGCATACCT 2883 >seq55701 Length=1651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 ||||||||||| || || ||||| || | |||| || | ||||| || || || || Sbjct 100 GTAGATTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCA-TCTTCAAGCTGCTTTCC 158 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 |||| | || || | ||||||||| || || ||||| ||||| || |||||| || Sbjct 159 AGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTT 218 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | ||| | || || | | ||| ||||| | ||| | |||||||| || | ||| Sbjct 219 AACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTCTTGCCTGTAAGTGT 278 Query 143167 TTTTACGAATATTTGCAT 143184 ||||| || |||||||| Sbjct 279 CTTTACAAAAATTTGCAT 296 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| ||||| || | || ||||| || || || || || || || ||| | | Sbjct 310 CGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACGCCCA 369 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| ||||| || || || | || || | ||| ||||| ||||| ||||| |||||| Sbjct 370 TCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTCTTTG 429 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| ||| |||| | || | || || | | ||| ||||| | || | Sbjct 430 TCCTGAATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATG 489 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || ||||| || ||||||||||| |||||||| Sbjct 490 GTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCAT 524 >seq110694 Length=236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||||||||| ||||| || | || ||||| || || || || || || | Sbjct 55 CCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCAGAC 114 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||||||||| || |||||| | ||||| | || || || ||||| Sbjct 115 AATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGAGGA 174 Query 143078 ATGCCTTCTTTGTC 143091 || ||||||||||| Sbjct 175 ATACCTTCTTTGTC 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504759827379120