Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq54613 150 1e-31 seq37844 100 2e-16 seq2515 96.9 2e-15 seq55701 86.0 5e-12 >seq54613 Length=3623 Score = 150 bits (166), Expect = 1e-31 Identities = 174/233 (75%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | |||| ||||||||| || || ||||| |||||||| || Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2610 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||||||||| || ||||| | |||||||||||||| || ||| Sbjct 2609 AGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 2550 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||||| |||||| |||| || |||||| | ||| || Sbjct 2549 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACT 2490 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || || |||||||||||||| || || ||||| |||||||| ||||| ||||| Sbjct 2489 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT-TTTGA 2438 Score = 107 bits (118), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| |||||||| || || || || ||| | | | ||||||||||| Sbjct 3549 ATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGATAGTGTGCGACCATCTTCTAATTG 3490 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | || | ||| || || || ||| || || |||||||| ||||| Sbjct 3489 CTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATACCCTCTTTGTCTTGGATTTT 3430 Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| |||||| |||| || ||||| ||| || ||||| || || ||||| |||| Sbjct 3429 AGCT-TTTACATTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCTG 3371 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 | || || |||||||| || |||||| Sbjct 3370 TAAGTGTCTTTACAAAGATCTGCATA 3345 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 15170 GAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCG 15229 || |||||||| || ||||| || ||| | | | ||||||||||| || ||||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 15230 TATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTAC 15288 | || | ||| || || || ||| || || |||||||| ||||| ||| ||||| Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCT-TTTAC 2962 Query 15289 AATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTT 15348 | |||| || ||||| ||| || ||||| || || ||||| || || || || || Sbjct 2961 ATTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTT 2902 Query 15349 TACAAAAATTTGCATA 15364 |||||| || |||||| Sbjct 2901 TACAAAGATCTGCATA 2886 >seq37844 Length=1442 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| || || || |||||||| |||||||| || || | | | |||||| Sbjct 494 ACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCT 435 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| ||| | || | ||| ||||| || ||||| || || ||||| Sbjct 434 AGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCTTGG 375 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| |||| || || ||| || || ||||| ||||||||||| Sbjct 374 ATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTAATGGTTTTC 315 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || |||||||| |||||| Sbjct 314 CCAGTAAGTGTCTTAACAAAAATCTGCATA 285 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || ||||| || || ||||| ||| ||| | | | || || | || || ||| Sbjct 254 GTAGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGACCATCCTCCAGCTGCTTACCA 195 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 ||| | || | |||||||||||| ||||| || |||||||| || ||| || Sbjct 194 GCGAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTGGCTTTA 135 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 ||| |||| || || || | ||| || ||||| || || ||||| ||||| || || Sbjct 134 ACATTTTCAATAGTGTCCGAAGGTTCAACTTCTAATGTGATTGTTTTCCCTGTGAGTGTC 75 Query 15347 TTTACAAAAATTTGCATA 15364 |||||||| || |||||| Sbjct 74 TTTACAAAGATCTGCATA 57 >seq2515 Length=4501 Score = 96.9 bits (106), Expect = 2e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAATTGTTTGC 15224 ||||| || ||||| ||||| ||||| | ||| || | ||||||| || || | Sbjct 3663 GTGGATTCCTTTTGAATGTTATAATCAG--ACAATGTACGTCCATCTTCTAGCTGCTTAC 3606 Query 15225 CAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT-GCTC 15283 |||| | ||||| ||||| ||||| |||||| ||||| || || || || ||| Sbjct 3605 CAGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTAGCT- 3547 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| |||| || ||||| ||| || || | ||||||||||||||| || || Sbjct 3546 TTTACATTTTCAATAGTATCAGAGGCTTCCACCTCAAGGGTAATGGTTTTACCCGTAAGG 3487 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| Sbjct 3486 GTCTTGACGAAAATTTGCAT 3467 >seq55701 Length=1651 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | || || | || | || || ||||| || || ||||| || | Sbjct 70 CCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGAT 129 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| | || || ||||| | || | | ||| || || ||| Sbjct 130 AGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 189 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || |||||| ||| ||| |||| || ||||| | ||| || Sbjct 190 ATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 249 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || ||||| || || ||||||||||||||||| Sbjct 250 TCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACAAAAATTTGCAT 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360608938237281