Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq121238 187 2e-42 seq32923 158 1e-33 seq55701 102 7e-17 seq54613 86.0 5e-12 >seq121238 Length=2101 Score = 187 bits (206), Expect = 2e-42 Identities = 653/1000 (65%), Gaps = 32/1000 (3%) Strand=Plus/Plus Query 100300 CTTGTTCAA-TTCGTTTTCAATTTGGCGATAATCGACAACGCCGTCTTCCCAAGTGCCGG 100358 |||| ||| ||| || |||||| | || ||||| || ||||||| |||||| || Sbjct 376 CTTGAGCAACTTCATTGGCAATTTCCCTGTAGTCGACCACTCCGTCTTGCCAAGTACCCT 435 Query 100359 TCACGGGCCCGGCAGCTGTGCCTGTGAA---ATAGTTGTCACCGTCATAGCCCGCCACGC 100415 | || || || | ||| |||||||||| || |||||| ||| || | || | Sbjct 436 TGACAGGTCCAGTAGCGTTGCCTGTGAAGGGATTGTTGTCTTCGTAAT---CATGAACTC 492 Query 100416 CTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGGGTCCACGCCCT 100475 | |||||||| || || ||||||||||| || || | ||| || || | ||| |||| Sbjct 493 CAGTCCAACCACGACCATACATGGCAACACCTACTACAATCTTCTTAGGATTCACTCCCT 552 Query 100476 G-GTTCGTGAGCAATTTCACGGCGTGATCCGTGTTGTACAGCTCGTTCGGGTTCCAACTC 100534 | | | || | ||| || || || | |||| || || |||||||| Sbjct 553 GTGCTAACAAGTATTTT-ACTCCGAAGTCAGAAGTGTAAGTTTCCTTGGGGTTCCATGCA 611 Query 100535 GGCGCGTAGAGAGTGGTTTGGTAGCCCAA----ATCGGTGTTTGACCAGGCGCCTTTAAA 100590 |||||||| | | ||||| | | |||| ||| ||||||||||| ||||| || Sbjct 612 GGCGCGTACAATGGTGTTTGAT-GTCCAAGAGTATCA---TTTGACCAGGCACCTTTGAA 667 Query 100591 ATCGTAGCTCAT-AAGAAATATTTTATCGAGAAGCTTTTGCGCAACGTCGTACTGTACCA 100649 ||||| ||||| |||||| || | ||| | | ||||| || | ||| | || | Sbjct 668 GTCGTAACTCATCAAGAAA-ATATGATCCATATAATTTTGAGCCTTGCTGTAGTCAACAA 726 Query 100650 CAGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGTTTTGCCCGTTT 100709 | ||||| || | || | || || || || || ||||| | || || | | Sbjct 727 CTTGGATTTTATCCCACCCAGCGCTAATAGCAGAAGTTAATTCGTATTTCTTACCATTCT 786 Query 100710 GCAGTTGT-AGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGTTGTACGTGTCG 100768 || || || | || |||||| | || ||||| |||| ||| | || || Sbjct 787 T-AGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCAAACTTACATAACAATCA 845 Query 100769 GCGTCGCGCTCCCCGTTGCCAAGAGTC-GGGTTGGCGCCTTTGCCGCCCGGAAACTCCCA 100827 | || || | | ||||| ||| ||||| ||||||||||| || || |||||||| Sbjct 846 CCATCTT-CTGGAC--TCCCAAG-GTCAGGGTTAGCGCCTTTGCCACCAGGGAACTCCCA 901 Query 100828 GTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGACCGAGTCCAC 100887 || || || || || || || || ||||| | ||| |||||||| || | ||| Sbjct 902 ATCGATATCAACACCATCGAAGAATTTCCATGTTAAAAGAAACTCCTTGACTGACTGCAC 961 Query 100888 AAACACGCGCCGTTTTTCCGCATCGTGCATGAAATAGAAC---GGGTCGGACAACGTCCA 100944 ||| || | | | | | || | |||| |||| || || | | |||||| Sbjct 962 AAAT---CGTGTTCTCTTAGATTTGTCAACGAAAAAGAAGAATGGATCAGCAAGCGTCCA 1018 Query 100945 GCCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCCGCCATTAGCTG 101004 || || || || || ||||| || | | || ||| | ||| | ||| | || Sbjct 1019 CCCACCAATAGAGGGAAGAATCTTCAAATCGGGTCGGGCTTGTTTGAGAGACATCAATTG 1078 Query 101005 ACCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGCGGTTTTTGTAT 101064 || |||||||| ||||| || || ||||||| |||| || |||| |||||||||| Sbjct 1079 GCCAAAATTGCCTTTGTAGGGTTCATTCCATGAAGACAATCCTCTTTGTGGTTTTTGTAA 1138 Query 101065 TGCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTGCAGGAGCGCTG 101124 ||| ||||| ||||| || || | |||||||||||| || || | || || ||||| Sbjct 1139 TGCTGCCCATGGATCATGGATTGAGACTTTGAAATCCTCGCGGCCGCTACAAGATCGCTG 1198 Query 101125 CAGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCGTCGCCGCCGCA 101184 | |||| |||||||| || ||| | | ||| |||| ||||| |||||||| Sbjct 1199 TAATGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTGATACCGTCACCGCCGCA 1258 Query 101185 AATGGGTATGAACCCGTACAACAGATGCGAGAGATTGGGCAGCGGCACTTTGTCTACCGG 101244 ||| || ||||| ||||| | ||||| | ||||| || | || | || || || Sbjct 1259 AATTGGAATGAAGCCGTAGAGTAGATGAGTAAGATTAGGTATAGGTATACGATCCACAGG 1318 Query 101245 AAAATTGCGGCCGTACACGCCCCACTCTACAAAATACGCA 101284 || || | || || ||||| ||||| ||||| ||| Sbjct 1319 GAATTTCCTAGGATAAACACCCCATTCTACGAAATAAGCA 1358 >seq32923 Length=5192 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24855 GCACACGATTCGGTCACGACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTAT 24914 || |||| || || | ||||| || ||||| || ||||||||||| || | ||||| Sbjct 1494 GCGCACGCCTCTGTGATCACCTTCTGGACATACTCTCGGCCCTTGACCAGCTGAACGTAG 1553 Query 24915 GCGCAGCGCCCGAACCAAAGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTG 24974 ||||| || ||||||| ||||||| || | ||||||| |||| || | |||||||| Sbjct 1554 GCGCACCGGTCGAACCAGCGCGCGTGCTGCTCCCACGGCACGTCGTCGTTCTCCCAGTCC 1613 Query 24975 TCCAAACCGCCGTCGCAGTAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAG 25034 | | |||||||| ||||| || || || |||||||| |||||||||| ||||| Sbjct 1614 TTGAGGCCGCCGTCACAGTAGAAGCACTTAGTTTTGTCGCCCTGGCCGGTGTAGAAGAAT 1673 Query 25035 CCAGCTTCTGCAAGTTTTTCGGGCCGTTGCTTCAAACCGCGTGGCCACTC 25084 || ||||| || |||| |||||| |||||||||| ||| ||||| || Sbjct 1674 CCCGCTTCGGCGAGTTCCTCGGGCTTCTGCTTCAAACTGCGAGGCCAGTC 1723 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25230 CGCAAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCC 25289 |||| ||| ||||| || |||||||| || || || | || || ||||||||||| Sbjct 1884 CGCAGAAAGGGGCACTGGGGCGCCCACCGCTGGTGGTCCTGGGCGGGATCGTCGCCCGCA 1943 Query 25290 TCCCAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAG 25349 |||| ||||| || ||||| |||||||||||||| ||||| |||||||| || | | Sbjct 1944 ACCCATTTCATAAGTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCTAGG 2003 Query 25350 TAGTAGAACCCATT 25363 || ||||| ||||| Sbjct 2004 TAATAGAAGCCATT 2017 >seq55701 Length=1651 Score = 102 bits (112), Expect = 7e-17 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| || | || |||| |||||| ||||| || || ||||||||||| || | Sbjct 70 CCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGAT 129 Query 18875 ATTGTTTTGGCGTCC----TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCAC 18930 | || |||||| || ||||| || || ||| |||||||||| |||||||| Sbjct 130 AGAGT----GCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGG 185 Query 18931 GGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTC 18990 ||| | ||||||||| || ||||||| || || | | | ||||| || || Sbjct 186 GGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTC 245 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 | ||| | ||||| || || ||||| | || || ||||||||||||||| Sbjct 246 CACTTCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACAAAAATTTGCATT 297 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | |||||| || || ||||| |||||||| || || | || ||| | || || Sbjct 315 CACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACGCCCATCTTC 374 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || || || || || |||| ||||| || ||||| || | |||||||||||| Sbjct 375 TAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTCTTTGTCCTG 434 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||||| | ||| ||||| || ||| ||| | || |||||||| Sbjct 435 AATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTT 494 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCT 19050 || ||||| ||||| || || |||||||| | ||||| Sbjct 495 CCCGGTTAAGGTTTTTACGAAGATTTGCATGATGAATCT 533 >seq54613 Length=3623 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| || ||||| || | | ||| | | || || | || || || Sbjct 2639 GTAGACTCCTTTTGGATGTTGTAGTCAGAAAGTGTACGGCCATCTTCTAATTGCTTTCCA 2580 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | | || ||||| || | ||| || ||||| |||||| |||| Sbjct 2579 GCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTT 2520 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||||| || || ||| | |||||||||||||| || | ||| Sbjct 2519 ACATTTTCAATAGTATCGGAAGCTTCAACTTCCAAAGTAATGGTTTTACCCGTAAGTGTT 2460 Query 19025 TTGACAAAAATTTGCATTTT 19044 ||||||||||| |||||||| Sbjct 2459 TTGACAAAAATCTGCATTTT 2440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412775380888954