Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2515 109 3e-19 seq54613 102 5e-17 seq55701 91.5 9e-14 >seq2515 Length=4501 Score = 109 bits (120), Expect = 3e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||| | ||||||||| || || ||||| || || ||||||||||| | || Sbjct 3681 CGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGACAATGTACGTCCA 3622 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||||| ||| ||| || || ||||||||||| | || || ||||| || Sbjct 3621 TCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCTTCCTTA 3562 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| ||| || || || || || || || || || Sbjct 3561 TCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCACCTCAAGGGTAATG 3502 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| |||||||| || || |||||||||||||| Sbjct 3501 GTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 3467 >seq54613 Length=3623 Score = 102 bits (112), Expect = 5e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| |||| | |||| || | ||| | || ||||| ||||| || ||||| ||||| Sbjct 2670 ACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 2611 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | | || || |||||||||||| ||| || |||||||| || || | || Sbjct 2610 AAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGG 2551 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 |||||||| || || ||| |||||| ||| ||| || ||| | || ||| Sbjct 2550 AATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAAC 2491 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 |||| ||| || ||||| |||||||| ||||| || ||||| ||||| || || Sbjct 2490 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTTGAT 2437 >seq55701 Length=1651 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | |||| ||||| || || ||||| || |||||||| ||||| Sbjct 70 CCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGAT 129 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || || || || | ||||||||| ||| || | | |||||| || | ||| Sbjct 130 AGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 189 Query 33263 ATGCCTTCTTTTTCGCTAAT---CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||| ||||| || ||| ||||| | || ||| ||| || || | || Sbjct 190 ATGCCCTCTTTATCCTGAATTTTCGCCT---TAACATTTTCAATTGTATCAGAAGCTTCC 246 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||| ||| || || || || ||||| || ||||| ||||||||||| Sbjct 247 ACTTCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACAAAAATTTGCAT 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317395509929418