Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq121238 208 6e-49 seq32923 118 9e-22 seq54613 98.7 8e-16 >seq121238 Length=2101 Score = 208 bits (230), Expect = 6e-49 Identities = 632/968 (65%), Gaps = 25/968 (3%) Strand=Plus/Plus Query 101018 TAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAA- 101076 || ||||| || ||||||| ||||||||| | || || || | ||| |||||||||| Sbjct 405 TAGTCGACCACTCCGTCTTGCCAAGTACCCTTGACAGGTCCAGTAGCGTTGCCTGTGAAG 464 Query 101077 --ATAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACG 101134 || |||||| ||| || | || || || |||||||| || || ||||||||||| Sbjct 465 GGATTGTTGTCTTCGTAAT--CATGA-ACTCCAGTCCAACCACGACCATACATGGCAACA 521 Query 101135 CCCACAATAATTTTGCGCGGGTCTACGCCCTG-GTTCGTGAGCGATTTAACAGCGTAATC 101193 || || | ||| || || | || ||||| | | || |||| || || | || Sbjct 522 CCTACTACAATCTTCTTAGGATTCACTCCCTGTGCTAACAAGT-ATTTTACTCCGAAGTC 580 Query 101194 CGTGTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAG 101253 | |||| || || |||||||| |||||||| | || ||||||| || || Sbjct 581 AGAAGTGTAAGTTTCCTTGGGGTTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAG 640 Query 101254 ATCGATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAA 101313 | |||||||| || |||||||| ||||| ||||| | || || | ||| | | Sbjct 641 AGTATCATTTGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATA 700 Query 101314 CTTTTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACT 101373 ||||| || ||| | || || ||||| || || | ||||| ||| Sbjct 701 ATTTTGAGCCTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGA 760 Query 101374 TGTTAATTCGTATGTTTTGCCCGTTTGCAGTTGCAACT-CGTCCAGCATTGCGCGCAATT 101432 |||||||||||| | || || | | || || | | | || ||||| | || |||| Sbjct 761 AGTTAATTCGTATTTCTTACCATTCTT-AGCTGAGAGTTCATCGAGCATCTCACGTAATT 819 Query 101433 CTTTCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTTGTTGCCGAGTGTTGGGTTGG 101492 |||||| ||| | || ||| | || |||| | || || ||||| | Sbjct 820 CTTTCATCAAACTTACATAACAATCACCATC---TTCTGGACTCCCAAGGTCAGGGTTAG 876 Query 101493 CGCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACCT 101552 ||||||| ||||| || |||||||||||||| || || || || || |||||||| Sbjct 877 CGCCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTA 936 Query 101553 GCAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATCGC------GTCGTGCA 101606 | ||| || ||||| || | |||||| ||| || || ||| | Sbjct 937 AAAGAAACTCCTTGACTGACTGCACAAAT------CGTGTTCTCTTAGATTTGTCAACGA 990 Query 101607 TATAATAGAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTG 101666 | | |||| || || | | ||||| || || || || || | ||| || | | | Sbjct 991 AAAAGAAGAATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAATCGG 1050 Query 101667 GATTGGCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAG 101726 | ||| |||| | ||| | || ||||| |||||||||||||| || ||||| | Sbjct 1051 GTCGGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCATG 1110 Query 101727 CAGATACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTTAA 101786 ||| | ||| | || |||||||||| ||| ||||| ||||| ||||| | ||||| | Sbjct 1111 AAGACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACTTTGA 1170 Query 101787 AATCTGAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTTGA 101846 |||| ||||| ||||| || || || |||| ||||| || || ||| | Sbjct 1171 AATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCGATCTCTTTTA 1230 Query 101847 GGGCGTCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTGAGA 101906 | ||| || | || || ||||| ||||| || ||||| ||||| | | ||| | | Sbjct 1231 AGCTGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATGAGTAA 1290 Query 101907 GGTTGGGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTACAA 101966 | || || | || | ||||| || || || | | ||| || ||||||||||| | Sbjct 1291 GATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATAAACACCCCATTCTACGA 1350 Query 101967 AATACGCA 101974 |||| ||| Sbjct 1351 AATAAGCA 1358 >seq32923 Length=5192 Score = 118 bits (130), Expect = 9e-22 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 23552 GCCCTTTACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGCGTGTTCTTCCCACGG 23611 |||||| || ||| | ||||| | ||| || || ||||| || ||||| | |||||||| Sbjct 1532 GCCCTTGACCAGCTGAACGTAGGCGCACCGGTCGAACCAGCGCGCGTGCTGCTCCCACGG 1591 Query 23612 CTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAAACATTTGACCCTGTC 23671 | ||||| | | |||||||| |||||||||||||| || | || || || |||| Sbjct 1592 CACGTCGTCGTTCTCCCAGTCCTTGAGGCCGCCGTCACAGTAGAAGCACTTAGTTTTGTC 1651 Query 23672 ACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGGCTTTTGTTTTAAACT 23731 |||| ||||||||| | || || ||||| || | || ||| ||||| || || ||||| Sbjct 1652 GCCCTGGCCGGTGTAGAAGAATCCCGCTTCGGCGAGTTCCTCGGGCTTCTGCTTCAAACT 1711 >seq54613 Length=3623 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || ||||| | | || || | ||| || ||||| || ||||| |||||||| || Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG-- 2612 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | | |||||| ||||| || || ||| |||| | | |||||||| | Sbjct 2611 AAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAG 2552 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||| ||||| |||||| ||| || | ||| || |||| || ||| Sbjct 2551 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAA 2492 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 ||||| ||||||||||| || || | |||||||||||||| |||||||| Sbjct 2491 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTT 2440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417768040489221