Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq55701 201 3e-46 seq54613 185 2e-41 seq110694 154 3e-32 seq37844 154 3e-32 seq2515 141 2e-28 seq54614 122 2e-22 seq231499 102 2e-16 seq110695 100 7e-16 seq172127 86.0 1e-11 >seq55701 Length=1651 Score = 201 bits (222), Expect = 3e-46 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||||| || || || |||||||||||||||||||| |||||| Sbjct 67 ATCCCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCA 126 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||| | || ||||| || || |||||||||||||| || || || ||||| || Sbjct 127 GATAGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGG 186 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || |||||||||||||| || || || |||||||| | ||||| || ||| Sbjct 187 GGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCC 246 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | ||||||||||| || |||||||| |||||||| || |||||| Sbjct 247 ACTTCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACAAAAATTTGCATT 297 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | || |||| || || || ||||| ||||||||||||||||| Sbjct 295 ATTCCACCCCTAAGGCGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCT 354 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||||||||| ||||| || |||||||| || |||||||| ||| Sbjct 355 GACAATGTACGCCCATCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGA 414 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| |||||||||||||| ||||| || || | ||||| || ||| Sbjct 415 GGAATGCCCTCTTTGTCCTGAATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCC 474 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || || || || | |||||||| || || ||||| Sbjct 475 ACTTCCAATGTGATGGTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCAT 524 >seq54613 Length=3623 Score = 185 bits (204), Expect = 2e-41 Identities = 186/241 (77%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| || || |||| || | ||||||||||| | ||||| || || || || || Sbjct 2679 TATTTGCATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTT 2620 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 |||||||| || || | || ||||||| ||| |||||||||||||| | | ||||| Sbjct 2619 GTAGTCAGAAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTG 2560 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||| ||||| || ||||| || || ||||| || |||||||||||||| | |||||| Sbjct 2559 ATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGA 2500 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||| || || | ||||| || ||||| ||||||||||| ||||| ||||||||||| Sbjct 2499 AGCTTCAACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTT 2440 Query 104563 G 104563 | Sbjct 2439 G 2439 Score = 178 bits (196), Expect = 3e-39 Identities = 182/237 (77%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| || || |||| || | ||||| ||||| | || |||||||| |||||||| Sbjct 3582 TATTTGCATGCCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATT 3523 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 |||||||||||| || | ||| ||||||| ||| || |||||||| || || | ||| || Sbjct 3522 ATAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTG 3463 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 |||||| || || || ||||| || || || || |||||||||||||| | ||||| Sbjct 3462 ATCAGGTGGGATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGA 3403 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| || |||| || || || || || |||||||| |||||||| |||||||| Sbjct 3402 GGCTTCAACTTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 161 bits (178), Expect = 2e-34 Identities = 152/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 |||||||| |||||||| ||||||||||| || | ||| ||||||| ||| || |||||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 || || || | ||| |||||||| || || || ||||| || || || || ||||||||| Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 ||||| | ||||| | ||| || |||| || || || || ||||| ||||| ||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 104546 ACAAATATCTGCAT 104559 ||||| |||||||| Sbjct 2900 ACAAAGATCTGCAT 2887 >seq110694 Length=236 Score = 154 bits (170), Expect = 3e-32 Identities = 136/170 (80%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||||| | | |||| || || || ||||| ||||| |||||||||||| Sbjct 52 ATTCCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCA 111 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| ||||| |||||||||||||| ||||||||||| || ||| Sbjct 112 GACAATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGA 171 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || || |||||||| |||||||||||||| || |||||||| | ||||| Sbjct 172 GGAATACCTTCTTTGTCCTGAATCTTTGCCTTAACATTTTCGATTGTATC 221 >seq37844 Length=1442 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||| |||||||||||||| ||||| | ||||| | ||| || || || || Sbjct 260 TGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGACCATCCTCCAGCTGC 201 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| |||||||| | ||||| || ||||| || || ||||| || || ||||| Sbjct 200 TTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTG 141 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | || || |||||| || |||| ||| || || || || || Sbjct 140 GCTTTAACATTTTCAATAGTGTCCGAAGGTTCAACTTCTAATGTGATTGTTTTCCCTGTG 81 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 ||||| |||||||| |||||||| Sbjct 80 AGTGTCTTTACAAAGATCTGCAT 58 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| |||| ||| | ||||| ||||| || || || |||||||| || || | || || Sbjct 498 AAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 439 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||||||||| || || || || || || | ||||||||| || || || || || || || Sbjct 438 TTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTC 379 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| || || |||||||| | || ||| || || ||||||| ||||| || Sbjct 378 TTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTAATGGT 319 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||||||||| || ||||| |||||||| Sbjct 318 TTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq2515 Length=4501 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| ||||| ||||| || ||||| ||||| ||||| | || | || ||| Sbjct 3678 AGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGACAATGTACGTCCATCT 3619 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 ||||| || || |||||||| || | | || || || || || || ||||| ||||| Sbjct 3618 TCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCTTCCTTATCT 3559 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| |||||||||||||| | ||||| | ||| ||||| || ||||| || Sbjct 3558 TGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCACCTCAAGGGTAATGGTT 3499 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| ||||| || || || || || |||||| || Sbjct 3498 TTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTG 3463 >seq54614 Length=296 Score = 122 bits (134), Expect = 2e-22 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||| |||||||||||||| ||||| | || || | ||| || || || || Sbjct 130 TGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGCGTACGACCATCCTCCAGCTGC 189 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||||||||| | ||||| || ||||| || || ||||| || || ||||| Sbjct 190 TTACCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTG 249 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523 ||||| |||||||| | || || |||||| || |||| ||| || Sbjct 250 GCTTTAACATTTTCAATAGTGTCTGAAGGTTCAACTTCTAATGTGAT 296 >seq231499 Length=289 Score = 102 bits (112), Expect = 2e-16 Identities = 112/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 237979 TATTTATACAAGTTGACGCTCACAATATTGTACCTTGTTGGGAAGCATCTCATAAACAAG 238038 ||||| | || || |||||||||||| | || || ||||||| ||| ||| ||||||| | Sbjct 134 TATTTTT-CAGGTAGACGCTCACAATGTGGTGCCATGTTGGGTAGCGTCTGATAAACAGG 192 Query 238039 AATACGGTGCTAGAACATTACGTAAGAAAATAAATGGTATGTTAGATACATATCTTACAG 238098 |||| || |||||| || | || ||||| ||| || ||||||| |||||| || | Sbjct 193 AATATTCAGCGAGAACAATAAGAAATAAAATCAATTCTAAGTTAGATGAATATCTCACCG 252 Query 238099 AATTTCCTGTAATAACTAAACATCCTTA 238126 | ||||| | | | |||||||||||| Sbjct 253 ACTTTCCACCAGTTATTAAACATCCTTA 280 >seq110695 Length=218 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||||||| | | |||| || || || ||||| ||||| ||||||||||| Sbjct 94 ATTCCACCTCTTAGACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCG 153 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| ||||| |||||||||||||| || || |||||||| ||| Sbjct 154 GACAATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGATCTGGA 213 Query 104450 GGTAT 104454 || || Sbjct 214 GGAAT 218 >seq172127 Length=1698 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 238573 CCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAA 238632 || |||| |||||| ||||||||| || || || ||||| |||| | | ||||||| Sbjct 683 CCAAAACACACGATGACCTATGGAACTCGGCTCAAATACAGCTGGTGAAAGAGGGCAAAA 742 Query 238633 TGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAA 238692 |||| ||||| |||| ||||| ||| || ||||| | |||||||| || ||| Sbjct 743 TGCACGGTTTCCTACGCATGTACTGGTGCAAGAAGATTTTAGAATGGACCCAGTCACCAG 802 Query 238693 AGGAAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATC 238752 | | || | | | | |||||| |||| ||| | ||| | ||||| | |||| Sbjct 803 AACAGGCGTTGAAGTTTGCTATTTACTTGAATGATCATTACAGTGTTGACGGCAGAGATC 862 Query 238753 CTAACGGATACGTAGGT 238769 |||| ||||| || ||| Sbjct 863 CTAATGGATATGTTGGT 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146150404891628