Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq121238 205 8e-48 seq54613 91.5 1e-13 >seq121238 Length=2101 Score = 205 bits (226), Expect = 8e-48 Identities = 643/977 (66%), Gaps = 23/977 (2%) Strand=Plus/Minus Query 30220 GTGGTGGCCGGTTACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGA-CTT 30278 || |||| | ||| || ||||| ||||||||||| || ||| || | || | | Sbjct 1366 GTTGTGGGTGCTTATTTCGTAGAATGGGGTGTTTATCCTAGGAAATTCCCTGTGGATCGT 1307 Query 30279 AGTTCCCGTCCCCAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGA 30338 | | || | || || ||||| ||||| | || ||||| | || | ||||| || || Sbjct 1306 A-TACCTATACCTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGCGGTGA 1248 Query 30339 TGGTATAAACGATAGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTG 30398 ||||| || || |||||||| | | || || | || ||||| |||||| Sbjct 1247 CGGTATCAATGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCATTACAGCGATCTTG 1188 Query 30399 CGCGGGTCGAGAGGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACC 30458 || || |||||||| ||||| | || || ||| |||| || | |||||||| Sbjct 1187 TAGCGGCCGCGAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTACAAAAACC 1128 Query 30459 ACAAAAAGGAGTGGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGC 30518 ||||| |||| || | ||| | || || || ||||| |||||||||||| ||||| | Sbjct 1127 ACAAAGAGGATTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAATTGATGTC 1068 Query 30519 GATTAAAAGACACAATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAG 30578 | ||| | | ||||| | | |||| | || |||||||| |||||||| ||| Sbjct 1067 TCTCAAACAAGCCCGACCCGATTTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGC 1008 Query 30579 CGACCCTTTCTTTAAATTGAGTTCTGCCGAA---AATCGCGC-CGTTTTCGTTGAGTCCG 30634 || || ||||| || ||| | | || || | | || ||| || |||| | Sbjct 1007 TGATCCATTCTTCTTTTTC-GTT--GACAAATCTAAGAGAACACGATTT-GTGCAGTCAG 952 Query 30635 -CACGAGAGTATTTGCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTT 30693 || | |||| | | ||||||||||| || || || | || ||||| |||||||| Sbjct 951 TCAAG-GAGTTTCTTTTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTC 893 Query 30694 CCGGGCGGTAAAGGTGCTAATCCCGAA-TTAGGAGATCCAGAAAAGGATGGAGTAACATA 30752 || || || ||||| ||||| || || || |||| ||||||| ||||| | || Sbjct 892 CCTGGTGGCAAAGGCGCTAACCCTGACCTTGGGAG-TCCAGAA---GATGGTGATTGTTA 837 Query 30753 TGTGCAGTTATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTCTA--AAGAAACAGGG 30810 ||| || ||||||| | | || ||||| | || || || ||||| || Sbjct 836 TGTAAGTTTGATGAAAGAATTACGTGAGATGCTCGATGAACTCTCAGCTAAGAAT--GGT 779 Query 30811 AAAAAATACCAGCTCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAAT 30870 || |||||| | | || || || |||||||| |||| ||||||||| | ||| | Sbjct 778 AAGAAATACGAATTAACTTCTGCTATTAGCGCTGGGTGGGATAAAATCCAAGTTGTTGAC 719 Query 30871 TATGAAAATGCGCAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGC 30930 || || || ||| | ||| | ||||| ||||| | |||| ||||| || ||||| Sbjct 718 TACAGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAAGGT 659 Query 30931 GCTTGGTCTAACACGGACT-TGGGATATCACACTACACTTTATTCACCCTCTTGGAACGC 30989 || ||||| || ||| | ||| |||| || || | || | || | |||||| | Sbjct 658 GCCTGGTCAAATGAT-ACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAACCC 600 Query 30990 TGAAGAAAAATATACTGCCGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTCAATAG 31049 | |||| || ||| | || | || ||| | |||||| ||| || ||| Sbjct 599 CAAGGAAACTTACACTTCTGACTTCGGAGTAAAATACTTGTTAGCACAGGGAGTGAATCC 540 Query 31050 TAAGAAAATAGTGCTAGCTGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCATGACAT 31109 |||||| || || ||| |||||| ||||| || | || ||||| || || ||||| Sbjct 539 TAAGAAGATTGTAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGAGTTCATGATTA 480 Query 31110 AAAAAACAACAATCCCTTTACGGGTGTAGCTCAGGGGCCGATTAAAGGAACTTGGGAAAG 31169 || ||||||||||||| || || ||| || || | || || |||||| || Sbjct 479 CGAAGACAACAATCCCTTCACAGGCAACGCTACTGGACCTGTCAAGGGTACTTGGCAAGA 420 Query 31170 TGGAGTTGTAGATTACA 31186 ||||| || || |||| Sbjct 419 CGGAGTGGTCGACTACA 403 >seq54613 Length=3623 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/240 (69%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 |||| |||||| || ||||||||| |||||||| |||| || ||| || | || || Sbjct 2651 ACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA-AAGTGTACGGCCATCTTC 2593 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 | ||||| || | |||| ||||| || ||||| || | | ||||||||| Sbjct 2592 TAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTG 2533 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| || | | | || ||||||| || || || | || |||||||| Sbjct 2532 AATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACTTCCAAAGTAATGGTTTT 2473 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG---TCTTGATCGAAGAAAGAGTGATG 48753 ||| || || ||||| |||||||||||||| || ||| || | ||||||| ||||| Sbjct 2472 ACCCGTAAGTGTTTTGACAAAAATCTGCATTTTGATATCTGGAACAAAGAAAGTATGATG 2413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419424826061741