Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq121184 125 4e-24 seq6784 125 4e-24 seq172423 123 1e-23 seq159936 123 1e-23 seq109318 123 1e-23 seq239918 120 2e-22 seq9736 120 2e-22 seq94224 118 6e-22 seq227339 116 2e-21 seq169905 116 2e-21 seq43282 116 2e-21 seq172425 114 7e-21 seq100353 114 7e-21 seq43280 114 7e-21 seq100380 113 2e-20 seq144850 87.8 9e-13 >seq121184 Length=3963 Score = 125 bits (138), Expect = 4e-24 Identities = 80/88 (91%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || ||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 1395 TAAAAAACAAACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 1454 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 1455 CGCTCTAACCAACTGAGCTAATGGGCCG 1482 >seq6784 Length=7819 Score = 125 bits (138), Expect = 4e-24 Identities = 82/90 (91%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| || || ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 6354 AATAAAACAT-AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 6296 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 6295 GACGCTCTAACCAACTGAGCTAATGGGCCG 6266 >seq172423 Length=1426 Score = 123 bits (136), Expect = 1e-23 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1255 AAAAAATTCGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1196 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 1195 GCTCTAACCAACTGAGCTAATGGGCCG 1169 >seq159936 Length=2781 Score = 123 bits (136), Expect = 1e-23 Identities = 91/106 (86%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| || || || || || ||||||||||| |||||||||| ||||||||| Sbjct 693 AAATATATAAACAAAAATAATTC---TTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 637 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 |||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 636 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCGACGA 591 >seq109318 Length=4093 Score = 123 bits (136), Expect = 1e-23 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 382 AATAAAAAAAGATCTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 323 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 322 GACGCTCTAACCAACTGAGCTAATGGGCCG 293 >seq239918 Length=1448 Score = 120 bits (132), Expect = 2e-22 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 596 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 537 Query 11515 CTGAGCTAATGGGCCGTCGA 11534 |||||||||||||||| ||| Sbjct 536 CTGAGCTAATGGGCCGACGA 517 >seq9736 Length=958 Score = 120 bits (132), Expect = 2e-22 Identities = 80/89 (90%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 623 AATAAAAAC---AATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 679 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 680 GACGCTCTAACCAACTGAGCTAATGGGCC 708 >seq94224 Length=3324 Score = 118 bits (130), Expect = 6e-22 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 2557 AAAAAACAC-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 2615 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||| ||||||||||||||||||||| || Sbjct 2616 CTCTAACCAACTGAGCTAATGGGCCGACG 2644 >seq227339 Length=369 Score = 116 bits (128), Expect = 2e-21 Identities = 80/91 (88%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||| |||| |||||||||| |||||||||| |||||||||||||||||||| Sbjct 175 AAAAAAGTAAATACTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 116 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| ||||||||||||||||||||| Sbjct 115 CGACGCTCTAACCAACTGAGCTAATGGGCCG 85 >seq169905 Length=1140 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 704 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 763 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 764 CTGAGCTAATGGGCCG 779 >seq43282 Length=1693 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| || | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 1078 AAAAAAAATTCGA--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 1135 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 1136 GACGCTCTAACCAACTGAGCTAATGGGCCG 1165 >seq172425 Length=428 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 160 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 101 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 100 CTGAGCTAATGGGCC 86 >seq100353 Length=1946 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 820 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 879 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 880 TGAGCTAATGGGCCG 894 >seq43280 Length=1578 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 823 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 764 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 763 TGAGCTAATGGGCCG 749 >seq100380 Length=2504 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 347 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 406 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 407 TGAGCTAATGGGCC 420 >seq144850 Length=5166 Score = 87.8 bits (96), Expect = 9e-13 Identities = 77/95 (81%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAA-TTGGCCCAT---GAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||||||| || | ||||||||| | | || ||||| |||||||||||| || | Sbjct 833 AATAAAAAAACATACTTGGCCCATAGGGGATTGACGGAACCCTCGACCTTCGCGCTAGTG 892 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||||| |||||||| |||||||||||| Sbjct 893 GCACGACGCTCTAACCAACTGGTCTAATGGGCCGT 927 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260357480469316