Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq55701 136 4e-27 seq110694 118 9e-22 seq37844 113 4e-20 seq2515 107 2e-18 seq110695 95.1 1e-14 seq54614 89.7 5e-13 seq54613 89.7 5e-13 >seq55701 Length=1651 Score = 136 bits (150), Expect = 4e-27 Identities = 177/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || || | |||| ||| ||||||||||| |||||||| || | Sbjct 285 AAAAATTTGCATTCCACCCCTAAGGCGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAAT 344 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||||| || | | | ||| | ||| || || || |||||| | || |||| |||| Sbjct 345 ATTATAGTC--TGACAATGTACGCCCATCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTT 402 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || |||||||||||||| || |||||||| | ||| |||||||| ||| ||| || Sbjct 403 TGTTGATCTGGAGGAATGCCCTCTTTGTCCTGAATCTTTGCCTTTACGTTCTCGATTGTA 462 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | ||||||||||| || || | ||||| || ||||| ||| Sbjct 463 TCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCGGTTAAGGTTTTTACGAAGATTTGC 522 Query 95006 ATG 95008 ||| Sbjct 523 ATG 525 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||||| || | |||| ||||||||||||||| || || | Sbjct 57 AAAAATTTGCATCCCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAAT 116 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || || | |||| ||| || ||||| ||||| |||| || | |||||| Sbjct 117 ATTGTAGTCAGATAGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTG 176 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||| ||||| || ||||| || | |||||| ||||| || | | || || Sbjct 177 CTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATC 236 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || || || || || ||||| || || ||||| || ||||| Sbjct 237 AGAAGCTTCCACTTCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACAAAAATTTGCAT 296 >seq110694 Length=236 Score = 118 bits (130), Expect = 9e-22 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| ||||| || |||||||| ||||||||||| |||||||| || | |||| Sbjct 47 TTTGCATTCCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTAT 106 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || ||| | ||| || || || ||||| |||| || | || || || | Sbjct 107 AGTCAGACAATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGT 166 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 |||||||||||||||||||||| | ||| |||||||| || Sbjct 167 CTGGAGGAATACCTTCTTTGTCCTGAATCTTTGCCTTAAC 206 >seq37844 Length=1442 Score = 113 bits (124), Expect = 4e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||||| | ||||| ||||||||||||||||| || || || | Sbjct 297 AAAAATCTGCATACCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAAT 238 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || ||| | ||| |||||||||||| || || | || |||| | ||| Sbjct 237 ATTGTAGTCGGCGAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTG 178 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || |||||||||||||| |||||||| | || || || || || | | |||||| Sbjct 177 TTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTC 118 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||| ||||| || || || || || |||||||||||||| Sbjct 117 CGAAGGTTCAACTTCTAATGTGATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 58 >seq2515 Length=4501 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||||| ||| | ||||| || ||||||||||| | ||||||||| | Sbjct 3693 CCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGAC 3634 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || ||| || ||||| || || ||||||| |||| |||||| ||||| ||| Sbjct 3633 AATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGA 3574 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | || || || || || | | ||| |||| | || || Sbjct 3573 ATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCACC 3514 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || |||||||| || ||||| || || || || || ||||| Sbjct 3513 TCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 3467 >seq110695 Length=218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||| ||||| | |||||||| ||||||||||| |||||||| || | |||| Sbjct 89 TTTGCATTCCACCTCTTAGACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTAT 148 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || ||| ||| ||||| || ||||| |||| || | |||||| |||| Sbjct 149 AGTCGGACAATGTGCGCCCATCTTCCAGTTGCTTTCCAGCAAAAATCAGTCTTTGTTGAT 208 Query 94893 CTGGAGGAAT 94902 |||||||||| Sbjct 209 CTGGAGGAAT 218 >seq54614 Length=296 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||||| | ||||| ||||||||||||||||| || || || | Sbjct 93 AAAAATCTGCATACCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAAT 152 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || || ||| | | || || |||||||||||| || || |||| |||| | | Sbjct 153 ATTGTAGTCGGCGA--GCGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGT 210 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || || |||||||||||||| |||||||| | || || || || || Sbjct 211 TGTTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTGGCTTTAAC 257 >seq54613 Length=3623 Score = 89.7 bits (98), Expect = 5e-13 Identities = 167/242 (69%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||| || |||| || | || | ||||| |||||||| | Sbjct 2682 AAATATTTGCATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGAT 2623 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| || || | ||||| | ||| || | || ||||| |||| || || | | Sbjct 2622 GTTGTAGTCAG--AAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGT 2565 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || |||||||||||||| ||||| ||||| | |||||| || || || | | ||| Sbjct 2564 TGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTA 2505 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | || |||||||| || ||||| ||||| ||||| |||||| Sbjct 2504 TCGGAAGCTTCAACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGC 2445 Query 95006 AT 95007 || Sbjct 2444 AT 2443 Score = 89.7 bits (98), Expect = 5e-13 Identities = 167/242 (69%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||||| || |||| |||| || | || ||||| ||||| | Sbjct 3585 AAATATTTGCATGCCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAAT 3526 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||||| || ||||||| || ||| || | || || || ||||||| | | Sbjct 3525 ATTATAGTCAG--ATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGC 3468 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| || || ||||| |||||||| | ||||| || || || | | || Sbjct 3467 TGCTGATCAGGTGGGATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTA 3408 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| | || || || | ||||| ||||| || ||||| || || |||||||||||| Sbjct 3407 TCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGC 3348 Query 95006 AT 95007 || Sbjct 3347 AT 3346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446297755502760