Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq22846 147 4e-31 >seq22846 Length=4362 Score = 147 bits (162), Expect = 4e-31 Identities = 523/794 (66%), Gaps = 55/794 (7%) Strand=Plus/Minus Query 3922 TTATACTTAAAGACTGATGTCCTTCTCTTGACTGATGTCTTTGAAAACTTTAGACGTAGT 3981 ||||| || || || || || | | |||| ||||| |||||||||||| | || Sbjct 1775 TTATATTTGAAAACAGACGTTTTGTTGCTGACCGATGTATTTGAAAACTTTCGCAATATA 1716 Query 3982 TGTTTCAAGACATACAATTTAGACGCACTACACTTTTATACAGCACCAGGTCT---TTCG 4038 ||| | || || || |||| ||| | || | ||||| ||||||||| | || | Sbjct 1715 TGTATGAAAACTTATGATTTGGACCCTGCTCATTACTATACCGCACCAGGTTTGAGTTGG 1656 Query 4039 AACGCTGCAATGTTAAAG--CATACTGAAGTAGAACTTGAACTGTTAACTGATCCTGAGA 4096 | ||| ||||||||| || | ||| ||||| | ||| | ||||| ||| ||| | Sbjct 1655 ---GATGCCATGTTAAAGTCCACAATGA--TAGAATTAGAATTATTAACAGATTTTGATA 1601 Query 4097 TGCTTCTTTTCATTGAAAAGGGTGTTCGCGGTGGGGTATCGATGTGTGCTAATAGACATG 4156 | |||||| |||||||| || | ||||| ||||| || ||| ||| ||| Sbjct 1600 AAATAGCTTTCATAAAAAAGGGTATTAGAGGTGGTATATCGCAATGCAGTAACAGATATG 1541 Query 4157 CTGAAGCTAACAACCGGTATATGGGCAAAGATTTTGAT-TCAAA---CAACCCCGAAACA 4212 | |||| || ||| | ||||| | |||| ||| |||| ||| || || Sbjct 1540 CGAAAGCAAATAACAAATTTATGG---AGGATTACGATAGCAAATTGCAATCC----TCA 1488 Query 4213 TACCTGATGTACTATGATGTAAATAATTTGTATGGCGCAGCGATG--AGTATGTCTTTAC 4270 || || | ||| |||| ||||||||| ||||| || ||| | | ||| | Sbjct 1487 TATCTAGTTTACCTCGATGCAAATAATTTATATGGGTGGGCTATGTCACAACCCCTT--C 1430 Query 4271 CAAAGGGTAAATTTGAATGGGTTGAAAATGTAGATGATGTAGATCAGTTTTTC-AATGAT 4329 ||| ||| | ||||||||||| | ||||| ||| || | ||| | | || ||| Sbjct 1429 CAATCGGTGACTTTGAATGGGTCG---ATGTAAATGTTG-ATTTCAACATAGCAAACGAT 1374 Query 4330 GATGAGAGTGTAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTTACATGAT 4389 | ||| | || ||||| | ||||| ||| | || ||||||| || |||| ||| Sbjct 1373 GCTGAATAT---GGATACATATTAGAAGTCGATTTGCAATATCCTGTTGATATACACGAT 1317 Query 4390 CTACACAAAGATCTACCTTTATGCCCAGAACATTTTGTACCACC--TGGTAGCAAGCAAC 4447 ||| || ||||||| ||| | ||| || | ||| | |||||| | || Sbjct 1316 AGTCACTCGGACTTACCTTTTTGCTCTGAAAATAT--ATCCATCGGTGGTAGTAGAGAAA 1259 Query 4448 AAAAACT--CACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTT 4505 ||||||| || ||||| || | |||||||| || ||| ||||||| |||| || || Sbjct 1258 AAAAACTAGTAC-CCAACT-TGAAAGATAAAAAAAAATATATTATTCATTATAGGAACTT 1201 Query 4506 GAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGA 4565 ||||||||| |||| ||||| | | | ||||| ||| ||| | ||||| Sbjct 1200 AAAACAATGTATAGACAACGGTTTGCATTTACATAAAATTCACAGAGTTCTAAAATT--- 1144 Query 4566 GCAATCAGA----CTGG--CTCAAATCATATATCGATAAAAATACC-GCATGCCGAAAAC 4618 ||| |||| ||| || || |||||||||| ||||||| |||| | || Sbjct 1143 -CAAACAGAGGGCGTGGTTGTCTAA--ATATATCGATTTAAATACCAAAATGCGGTCCAC 1087 Query 4619 TAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAA 4678 || | ||| ||||| ||| | ||||| || || ||||||||| | || ||||||| Sbjct 1086 -GGCGTGTACTGAATTCGATAAAGATTTTTACAAGTTGATGAATAATTCAGTATTTGGAA 1028 Query 4679 AGACGATGGAGAAT 4692 | || ||||||||| Sbjct 1027 AAACTATGGAGAAT 1014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97560514556514