Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq121238 291 7e-74 seq37844 95.1 1e-14 seq110694 91.5 1e-13 seq201183 84.2 2e-11 >seq121238 Length=2101 Score = 291 bits (322), Expect = 7e-74 Identities = 656/975 (67%), Gaps = 18/975 (2%) Strand=Plus/Minus Query 55830 GCATATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTGTCACTCGAGTTCCCACT 55889 || ||||| || || ||||||||||||| ||| || || ||||| ||| | || | Sbjct 1357 GCTTATTTCGTAGAATGGGGTGTTTATCCTAGGAAATTCCCTGTGGATCGTATACCTATA 1298 Query 55890 CCTAATCTGTCACACATTCTCTACGGATTCATACCGATATGCGGCGGCGACGGCATTAAC 55949 |||||||| | || | |||||||| ||||| || || |||||||| ||||| || || Sbjct 1297 CCTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGCGGTGACGGTATCAAT 1238 Query 55950 GACAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGCGATCGTGTTCGGGTCGA 56009 ||||| | || ||| || ||||| |||| | |||||||| ||| || || Sbjct 1237 GACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCATTACAGCGATCTTGTAGCGGCCGC 1178 Query 56010 GACGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCCAAAAGCCCCAAAAACAA 56069 || || |||||||| || || ||||| || ||||| || | ||||| || |||| | | Sbjct 1177 GAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTACAAAAACCACAAAGAGGA 1118 Query 56070 GTGACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAATTGATGGCAGCTAAACTG 56129 || | ||||||| ||||| ||||||||||| ||||| ||||||||| | |||| Sbjct 1117 TTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAATTGATGTCTCTCAAACAA 1058 Query 56130 GCGAATCCCCATGTTAAAGTGCTGCCTTCGATCGGTGGCTGGACTTTATCCGATCCGTTC 56189 || ||| || | || | || || || || ||||| ||||| | | ||||| ||| Sbjct 1057 GCCCGACCCGATTTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCTGATCCATTC 998 Query 56190 TTTTACTTTCACGATGCGG--TCAAACGCAAAATT-TTTGTCGATTCTGTCGTCGAGTTT 56246 || |||| || || || || || | ||||| | || ||| |||||| Sbjct 997 TT---CTTTTTCGTTGACAAATCTAAGAGAACACGATTTGTGCAGTCAGTCAAGGAGTTT 941 Query 56247 TTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAG 56306 | || |||||||| ||||||||||| || ||||| |||||||| || || || || Sbjct 940 CTTTTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAA 881 Query 56307 GGGGCCAATTCCAACGTCGGCGATGCCGAACGCGATCGCAACACGTACACGATTCTGTTA 56366 || || || | || | || | | ||| ||| | | || | | || | Sbjct 880 GGCGCTAACCCTGACCTTGGGAGTCCAGAA---GATGGTGATTGTTATGTAAGTTTGATG 824 Query 56367 CGAGATTTACGCGAAGCGCTAGACCGA--CTAAGCCTCGAAACGAATCGAACATACGAGC 56424 ||| ||||| || ||| || | || ||| ||| | | ||| |||||| Sbjct 823 AAAGAATTACGTGAGATGCTCGATGAACTCTCAGCTAAGAATGGTA-AGAA-ATACGAAT 766 Query 56425 TAACCAGCGCCATTAGCGCCGGCGATGACAAAATCACGGTCGTCGACTACACAGCCGCTC 56484 |||| || |||||||| || || |||||| || || ||||||| |||| Sbjct 765 TAACTTCTGCTATTAGCGCTGGGTGGGATAAAATCCAAGTTGTTGACTACAGCAAGGCTC 706 Query 56485 AAAAATATTTAGATTATAtttttttGATGACATACGATTTTAAAGGCGCTTGGTCGAATA 56544 |||| ||| | ||| ||||||| ||||||| ||||| || ||||| || ||||| ||| Sbjct 705 AAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAAGGTGCCTGGTCAAATG 646 Query 56545 GCGATCTGGGCTATCAGACGACTTTGTACGCGCCTGCGTTTAATCCTAAAGAACACTATA 56604 ||| || |||| || | |||||||||||||| | || || || ||| || | Sbjct 645 ATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAACCCCAAGGAAACTTACA 586 Query 56605 CGACCGATTTTGCGGT-TCGTGCTCTGCTTAAACAAAAAGTCGAGAATAAAAAGATTGTA 56663 | | || || | || | || || | ||| ||| | ||| ||||||||| Sbjct 585 CTTCTGACTTCGGAGTAAAATACT-TGTTAGCACAGGGAGTGAATCCTAAGAAGATTGTA 527 Query 56664 GTCGGCGTAGCTATGTACGGTCGCGGGTGGACCGGCGTCGGTGATTTCGTCGACAAAAAC 56723 || || || || ||||| ||||| || ||||| || || ||||| || ||| ||| Sbjct 526 GTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGAGTTCATGATTACGAAGAC---AAC 470 Query 56724 AATCCATTTTCCGGCACGGCCAAGGGACCTGTCAAAGGTACCTGGGAAGACGGAGTCGTT 56783 ||||| || | |||| || | ||||||||||| ||||| ||| |||||||||| || Sbjct 469 AATCCCTTCACAGGCAACGCTACTGGACCTGTCAAGGGTACTTGGCAAGACGGAGTGGTC 410 Query 56784 GATTTTAGAGAAATT 56798 || | || |||||| Sbjct 409 GACTACAGGGAAATT 395 >seq37844 Length=1442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | ||||| ||| | ||||| | || || ||| | | Sbjct 286 ATGCAGATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTAGAGGTGGAGCCAGCC 345 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || || ||||| ||||| || || || || || |||||| Sbjct 346 GACACTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAA 405 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||||| ||||||| | | | | | || || ||| Sbjct 406 CAGCGTCTTATCTTCGCAGGCAAGCAACTAGAAGATGGCCGCACCCTGTCTGACTACAAC 465 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || |||||||| ||||| | ||||||||| Sbjct 466 ATCCAAAAAGAGTCTACTCTGCATTTAGTG 495 >seq110694 Length=236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || || ||||||| ||||||||||| || ||||| || ||| Sbjct 221 GATACAATCGAAAATGTTAAGGCAAAGATTCAGGACAAAGAAGGTATTCCTCCAGACCAA 162 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||||| | || |||||||||||||||| | | | | || ||||| Sbjct 161 CAGAGGCTGATTTTTGCTGGAAAGCAACTCGAAGATGGCCGCACATTGTCTGACTATAAT 102 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || ||||| || | || |||||||| | || ||||| ||| Sbjct 101 ATCCAGAAGGAATCAACTTTGCACTTAGTGTTGCGTTTAAGAGGTGGA 54 >seq201183 Length=1230 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 120879 CATCCTAATGTGAAGGCATTCGTGACTCAGGGCGGAGTACAATCGACGGACGAAGCTATT 120938 ||||||||||||||||||||| | || || ||||| |||||||||| || ||||| || Sbjct 643 CATCCTAATGTGAAGGCATTCATTACACAAGGCGGTCTACAATCGACAGATGAAGCAATA 702 Query 120939 GAAGCGCTCGTGCCGCTGATCGGACTACCAATGATGGGAGATCA 120982 |||| || || || || ||| |||| ||| | |||||||| Sbjct 703 ACAGCGGGTGTACCTCTAATTGGAGTACCTATGTTAGGAGATCA 746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428071972299855