Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq121238 152 5e-32 seq7548 147 2e-30 seq37844 122 8e-23 seq54613 111 1e-19 seq2515 107 2e-18 seq55701 89.7 5e-13 >seq121238 Length=2101 Score = 152 bits (168), Expect = 5e-32 Identities = 337/502 (67%), Gaps = 10/502 (2%) Strand=Plus/Minus Query 23643 GCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAGTGCCCGTG 23702 || || || || || ||||| || ||||| || |||| || || || | || | Sbjct 1357 GCTTATTTCGTAGAATGGGGTGTTTATCCTAGGAAATTCCCTGTGGATCGTATACCTATA 1298 Query 23703 CCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGGAATTAAC 23762 |||||| | | ||| | |||||||||||| | || || |||||||| || || || || Sbjct 1297 CCTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGCGGTGACGGTATCAAT 1238 Query 23763 GAC-GCTCTCAAAACCGTGCCGGGCAGTTTCGAGGCGCTGCAGCGTTCGTGCGCGGGCCG 23821 ||| ||| | ||| | ||||||||| | || | ||||| || || ||||| Sbjct 1237 GACAGCT-TAAAAGAGATCGAAGGCAGTTTCCAAGCATTACAGCGATCTTGTAGCGGCCG 1179 Query 23822 CGCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCGCAGAAGGG 23881 || || ||||| || || ||||| ||||| |||||||| | || || || || | || Sbjct 1178 CGAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTACAAAAACCACAAAGAGG 1119 Query 23882 AGTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCAACGAAACT 23941 | |||| | ||||| || || || || || ||||| || |||||| | |||| Sbjct 1118 ATTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAATTGATGTCTCTCAAACA 1059 Query 23942 GGCGTATCCGCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCTGATCCGTT 24001 || || | ||||| | || || || || ||||| |||||||| ||||||| || Sbjct 1058 AGCCCGACCCGATTTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCTGATCCATT 999 Query 24002 ----TTATCACATGCACGAGCCCAGCGTACGCCGTGTGTTTATCGACTCTGTCGAAGAGT 24057 || | || | | || | || | ||| | | || ||| | |||| Sbjct 998 CTTCTTTTTCGTTGACAAATCTAAGAGAACAC----GATTTGTGCAGTCAGTCAAGGAGT 943 Query 24058 TTTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTCCCCGGCGGCA 24117 || | ||||| ||||||||||| || || || || || |||||||||||||| || |||| Sbjct 942 TTCTTTTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCA 883 Query 24118 AAGGGGCAAATCCCAACGTTGG 24139 |||| || || || || |||| Sbjct 882 AAGGCGCTAACCCTGACCTTGG 861 >seq7548 Length=2633 Score = 147 bits (162), Expect = 2e-30 Identities = 445/686 (65%), Gaps = 10/686 (1%) Strand=Plus/Minus Query 145102 GTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGT 145161 ||| || || ||||||||||||||||| | || || || ||||| || || | ||||| Sbjct 1856 GTTTGATGTAAAGGGTTCAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGT 1797 Query 145162 GGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAG 145221 ||||| || | ||||| |||||||||| || || || || | ||| || || Sbjct 1796 TGGCATAGGAGCTAACAATAGAGAATTGCGCAAACCATGTTTTGCTATTTTTTCTTTGAG 1737 Query 145222 CGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCC 145281 | | |||| ||||| || || || | ||||||||| || || || | || || Sbjct 1736 GGCAGCCCAGTCCCACAGTTCCGTAGGAGTTTTGTCCCACATATCATATTGTAGGATACC 1677 Query 145282 CTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTT--GGCGAGCTCG 145339 | ||| | || || |||| | | | |||||| ||| || |||| || | || Sbjct 1676 TTGGCTCACTGGACTCCCTTCATAAGTACTGTA--TGCACCTTCTTTTTCTGCTAATTCA 1619 Query 145340 CAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATC 145399 ||||| || || | || || ||||||| || || ||||| || || || || Sbjct 1618 CAACTAGCTTCTAATGCACCATAATAAATAGTTTCAAATATTTGTTGATTAAGGAGTATT 1559 Query 145400 GCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATT 145459 |||| || || ||||| || || | || || ||||| | ||| || | ||||| | Sbjct 1558 GCTTTCTCACTTTCGTAAGGTATTCTCATCAACACAAATGTATCTGCCATTCCCTGAACA 1499 Query 145460 CCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGA 145519 || | ||||| ||||| || ||||| || | | || || |||||| Sbjct 1498 CCAATACCGATAGGCCGGTGCTTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAG 1439 Query 145520 TTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTT 145579 ||| || || | ||| || || ||| | || | ||||| || | || ||| Sbjct 1438 TTAACATCAATGACTTTGTTTAAATTTTGAGTGACAATTTTTGTGATTTCTTTTAATTTT 1379 Query 145580 TCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAA 145639 | ||| | ||| | | ||||| | || | || | || || || || | | Sbjct 1378 TTAAAATTAAATTGCTTATGTTCAACAAACA------TGTTAAGTGCTATGGAAGCAAGA 1325 Query 145640 TTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTA 145699 || || |||||| || || | ||||||| || | ||| | ||| | ||||||| Sbjct 1324 TTGCATACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTA 1265 Query 145700 CATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGC 145759 ||||| || || || ||||| | |||||||| |||||||| || || ||||| || | | Sbjct 1264 CATTTAATAGTGCCAAGATTCTTTTGATTACTCTTCCTGTTACAAGCATCCTTATACAAC 1205 Query 145760 ATGTACGGTCCGCCAGTCTCCACCTG 145785 ||||| ||| ||||||||||| || Sbjct 1204 ATGTATGGTGTACCAGTCTCCACTTG 1179 >seq37844 Length=1442 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||||||||| | || ||||| ||||| |||||||| || | Sbjct 512 CCACCACGAAGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGAC 453 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || ||||| |||||||||||| |||| | |||||| || || || || Sbjct 452 AGGGTGCGGCCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGA 393 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||| |||| | ||| | Sbjct 392 ATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACC 333 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || || || || || || ||||||||||| Sbjct 332 TCTAAAGTAATGGTTTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq54613 Length=3623 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| |||| ||| | ||| ||||||||||| |||||||| || Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2610 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| ||||| || || | || ||||| || || || ||||| Sbjct 2609 AGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 2550 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| |||| | | || | |||||||| | || | Sbjct 2549 ATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAAC 2491 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||| || || ||||| || ||||||||||| Sbjct 2490 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT 2443 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || ||||| || | ||| ||||||||||| |||||||| || Sbjct 3344 CCTCCTCGCAGACGGAGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAT 3285 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || |||||||||||| |||| | |||||| || || ||||| Sbjct 3284 AAGGTACGGCCATCTTCCAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGAGGA 3225 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 3224 ATACCCTCCTTGTC 3211 >seq2515 Length=4501 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | |||||||| | ||| | || || |||||||||||||| ||||| | Sbjct 3693 CCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGAC 3634 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || ||||||||||| || || |||| || || |||||||| || || Sbjct 3633 AATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGA 3574 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || || | | || | |||||| | || || | Sbjct 3573 ATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCACC 3514 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| || || || || |||||||| ||||| Sbjct 3513 TCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 3467 >seq55701 Length=1651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||||||||| || | || || ||||| ||||| || || || || || ||| Sbjct 310 CGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACGCCCA 369 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || ||||| ||||| || ||| | |||| | || || || ||||| || || |||||| Sbjct 370 TCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTCTTTG 429 Query 131140 TCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| | | || ||| | | ||| | ||||| | | || | || | || | Sbjct 430 TC-CTGAATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGAT 488 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||||| ||||||| ||||||||||| || ||||||| Sbjct 489 GGTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCATGA 526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 469913871181440