Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq121238 156 3e-33 seq54613 109 4e-19 seq37844 96.9 3e-15 >seq121238 Length=2101 Score = 156 bits (172), Expect = 3e-33 Identities = 766/1198 (64%), Gaps = 41/1198 (3%) Strand=Plus/Plus Query 95829 ATATTCATGGCATTAAGCAGATCGCCATTGTCAGCGTCTATTTCCCAGGCAAACAAACCT 95888 || ||||||||||| || ||||| || || || ||||| |||||||| ||||| | ||| Sbjct 180 ATGTTCATGGCATTCAGTAGATCACCGTTATCGGCGTCGATTTCCCAAGCAAAGAGACCG 239 Query 95889 CCTAACTTGTTTTGTTCCACATATCGACCTTTAGCTATAACAGAATCAACACTATCATAT 95948 |||| |||||| | | ||||| ||| || | ||||| || | || ||||||| Sbjct 240 CCTAGCTTGTTATTTCTTACATACTTACCCTTCTCAATAACTGATCTAGCATTATCATAG 299 Query 95949 GAAATTAAATCGCCT-TTGGTTTTATCAAAAACGTAGGCGGCTTTTGCTACGTTGTCA-A 96006 | | | || || ||| | | | || | |||| | |||| || || ||||| | Sbjct 300 GTTACAAGGTCTCCAGTTGATGGTCTGAAGA-CGTAAGGTGCTTGGGCGACATTGTCGTA 358 Query 96007 ATTTAACAATATATTTGTTT-----ATTTCGTTTTTGATTTGGCGATAATCAACAACGCC 96061 || ||| || || | ||| || |||| | || || || || || Sbjct 359 ATGGAACTCCCACTTGCCTTGAGCAACTTCATTGGCAATTTCCCTGTAGTCGACCACTCC 418 Query 96062 ATCTTCCCAAGTGCCCGAAACGGGCCCGTTACTACTTCCCAAAAAATAGTTATCGTTTTC 96121 |||| |||||| ||| || || || || | || || || | || ||| Sbjct 419 GTCTTGCCAAGTACCCTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGGATTGTTGTCTTC 478 Query 96122 GTAATT-TGACACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGC 96180 ||||| ||| ||||||||||| || ||||| |||||||| || || || | ||| || Sbjct 479 GTAATCATGA-ACTCCAGTCCAACCACGACCATACATGGCAACACCTACTACAATCTTCT 537 Query 96181 GCGGGTCCACGCCTTGATTTGTGAGCAA---TTTAACGGCATGGTCCGTGTTGTACAGCT 96237 || | ||| || || || | ||| ||| || | ||| | |||| | Sbjct 538 TAGGATTCACTCCCTG---TGCTAACAAGTATTTTACTCCGAAGTCAGAAGTGTAAGTTT 594 Query 96238 CGTTTGGGTTCCAACTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACC 96297 | || |||||||| |||||||||| || ||||| | ||| | | | ||||||| Sbjct 595 CCTTGGGGTTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCATTTGACC 654 Query 96298 ACGCGCCTTTAAAATCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGT 96357 | || ||||| || ||||| ||||| | || || | || | | ||||| || | Sbjct 655 AGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGC 714 Query 96358 CGTATTTTACTACAGCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACG 96417 ||| | || || ||||| || || || || || ||| || || ||||| Sbjct 715 TGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGAAGTTAATTCGTATT 774 Query 96418 TTTTGCCCGTTTGCAGTTGCAACT-CGTCTAACATCACGCGCAATTCCTTTAATAGAATG 96476 | || || | | || || | | | || | |||| | || ||||| || | | | | Sbjct 775 TCTTACCATTCTT-AGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCAAACT- 832 Query 96477 TTGTACGTGTCAGCGTCGCGCTCTT-TGT--TGCCGAGCGTC-GGGTTGGCGCCTTTACC 96532 ||| | || || | |||| || | || || ||| ||||| |||||||| || Sbjct 833 ---TACATAACAA--TCACCATCTTCTGGACTCCCAAG-GTCAGGGTTAGCGCCTTTGCC 886 Query 96533 GCCCGGAAATTCCCAGTCGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTC 96592 || || || ||||| ||||| || || || ||||| |||||||| | ||| || Sbjct 887 ACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAAAAGAAACTC 946 Query 96593 TCTGACGGAGTCTACAAACACGCGCCGTTTTTCCGCGTCGTGCATGTAATAGAAC---GG 96649 |||| || | ||||| || | | | | | || | | || |||| || Sbjct 947 CTTGACTGACTGCACAAAT---CGTGTTCTCTTAGATTTGTCAACGAAAAAGAAGAATGG 1003 Query 96650 GTCGGACAGTGTCCAGCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTT 96709 || | || ||||| || || ||||| || ||||| || | | || || |||| Sbjct 1004 ATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAATCGGGTCGGGCTTGTTT 1063 Query 96710 GGCCGCCATCAACTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTT 96769 | | |||||| || ||||| |||||||||||||| || ||||| | ||||| || | Sbjct 1064 GAGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCATGAAGACAATCCTCT 1123 Query 96770 TTGCGGTTTTTGTACTGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCC 96829 ||| |||||||||| ||| ||||| || || || || | ||||| ||||| ||||| Sbjct 1124 TTGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACTTTGAAATCCTCGCGGCC 1183 Query 96830 CTGGCAAGAGCGTTGCAGCGCTTCAAAACTACCGGGTAT-GGTTTTAAG--GGCATCGTT 96886 ||||| || || | |||| ||||| || || ||||||| | ||| | | Sbjct 1184 GCTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTGAT 1243 Query 96887 AAGGCCGTCGCCGCCACAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAG 96946 | ||||| ||||| ||||| || || || ||||| | | ||| | | || || | Sbjct 1244 A---CCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATGAGTAAGATTAGGTAT 1300 Query 96947 CGGCACTTTGTCCACCGGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGCA 97004 || | ||||| || || || | | ||| || |||||||| || ||||| ||| Sbjct 1301 AGGTATACGATCCACAGGGAATTTCCTAGGATAAACACCCCATTCTACGAAATAAGCA 1358 >seq54613 Length=3623 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | |||||| | ||| || || ||||||||||| ||||||||||| | Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2610 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || ||||| || || ||| |||| | || ||||| || ||| Sbjct 2609 AGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 2550 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| ||||| ||| || || | | | ||| ||| | || Sbjct 2549 ATGCCTTCCTTGTCTTGAATTTTGGCT--TTTACATTTTCAATAGTATCGGAAGCTTCAA 2492 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| || |||||||| || || || |||||||||||||||||||||||| Sbjct 2491 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTTG 2439 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||||| | || || |||||||||||||| ||||||||||| | Sbjct 3344 CCTCCTCGCAGACGGAGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAT 3285 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| ||| ||||| || | ||||| |||||||| || ||| Sbjct 3284 AAGGTACGGCCATCTTCCAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGAGGA 3225 Query 16829 ACGCCCTCTTTGTC 16842 | ||||| ||||| Sbjct 3224 ATACCCTCCTTGTC 3211 >seq37844 Length=1442 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | |||||| || ||||| ||||| ||||||||||| | || ||| | | || Sbjct 497 AGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 438 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| ||||| || | ||||| |||||||| || || | ||||| ||||| Sbjct 437 TCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCT 378 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||||| | |||||| || | || |||| Sbjct 377 TGGATCTTAGC--CTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTAATGG 320 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || |||||||||||||| Sbjct 319 TTTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || ||||| |||| || ||||| || || || ||||||||||| Sbjct 284 CCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCG 225 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| || || || || |||| || || |||||||| ||| Sbjct 224 AGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGA 165 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||||| || || ||| || || | | | |||||| || || Sbjct 164 ATACCCTCTTTGTCTTGGATCTTGGCT--TTAACATTTTCAATAGTGTCCGAAGGTTCAA 107 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||| ||||| || || || || || ||||| |||||||| Sbjct 106 CTTCTAATGTGATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403331703125590