Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq30462 181 7e-41 seq75004 156 3e-33 seq54613 143 2e-29 seq215 140 2e-28 seq53481 129 4e-25 seq55701 98.7 7e-16 seq110694 91.5 1e-13 seq37844 89.7 3e-13 seq2515 86.0 4e-12 >seq30462 Length=2600 Score = 181 bits (200), Expect = 7e-41 Identities = 133/155 (86%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||||| || ||||||| || || || |||||||||||||||||||||||||| |||||| Sbjct 1918 ATGGGGTCCGTGAACGTGAACCGGAACGTGGCGGACGCGTTCTACCGCTACAAGATGCCG 1977 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||||||||||||||||||||||| ||||| ||||| || || || || || ||||||||| Sbjct 1978 CGCATCTGCGCCAAGGTCGAGGGCAAGGGGAACGGCATCAAGACGGTTATCGTCAACATG 2037 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 || || ||||| ||||||||||| | || ||||| Sbjct 2038 CCGGAGGTCGCCAAGGCGCTCGGGAGGCCGGCCAC 2072 >seq75004 Length=1229 Score = 156 bits (172), Expect = 3e-33 Identities = 350/520 (67%), Gaps = 27/520 (5%) Strand=Plus/Minus Query 6811 ACCTGACTGAGAGTACCAAGTCTATGACGTTGAACGAAGACATGGaaaaaaaCCAAAAGC 6870 ||||||| ||| | ||||| |||||| || ||| |||| || || ||| | |||| Sbjct 735 ACCTGACGGAGGGCGCCAAGAGCATGACGCTGTCCGAGGACAGCGAGAAGAACGAGAAGC 676 Query 6871 AACGTTTGGACCTGTTCTATGTGTACCTCAAGCAGAAGCACACCTCCGG-CGATGTCTCG 6929 | || ||||| ||||||| || ||| |||||| || || | ||| || ||| Sbjct 675 AGCGCATGGACATGTTCTACTCGTTCCTGAAGCAGC-GCGCAGATGCGGGCGCCGTC--- 620 Query 6930 GAACACAAAGTCGCTGCGGATCTGTTACACGAGGCTGAACGGTTAAAAGTGAAATCAAAG 6989 || ||| || || || | |||||||| ||| | | ||| | || Sbjct 619 --------AG-CGCCGCCGACGTGCTGCACGAGGCCACACGCCTGGACGTGCGCGCCAAT 569 Query 6990 GCGCCGCTGGTGCTTTTTGAGGTGCTGGTGCGTCCGGCCGCGCTGGCGTGCGATGTGCGC 7049 |||||||| ||| ||| |||||||||||| || | |||| || ||| || ||| Sbjct 568 GCGCCGCTTGTGGCTTTCGAGGTGCTGGTGGCGCCACGCACGCTCGCCGCCGACGTACGC 509 Query 7050 AAGTACCGCGCGCTGTTGCTGCGCTTTACGCAACATGACCCGCGCGCGCAACGCGCCGTT 7109 ||||||| | |||||||||| || | ||| | ||||||| ||||||| Sbjct 508 CGCCACCGCGCCACGCTGCTGCGCTTGACTCGCGCAGACGCCCGCGCGCCCCGCGCCGCG 449 Query 7110 CT-CACTGCGCTTTGTGTGCT---------CGACACTGCGCTGCTGCCCAAAGTGGCCGG 7159 || ||| ||||| | ||| ||| | |||||||||||||| || ||| Sbjct 448 CTGCAC-GCGCTCACGGCGCTGGCAGCCGCCGAGCCCGCGCTGCTGCCCAAGCTGCCCGC 390 Query 7160 CGCGCTTAAACTGCTGTACGACCTAGACATAGTACAAGAGAAAACGATCATGGAGTGGTT 7219 |||||| |||||||| |||||||| ||||| || | ||| | | | | || ||| Sbjct 389 CGCGCTCAAACTGCTTTACGACCTCGACATCGTGGACGAGCGAGCTGTGCTCGACTGGGC 330 Query 7220 CCACAAGCCGTCGTGCAAG-ACTCTCAGCAAAGAAGTGATGGCTGACGTGCACCGCCGCG 7278 | |||||| ||| ||||| || | | ||| || ||| |||| || |||| || |||| Sbjct 329 CGCCAAGCCCTCGCGCAAGTACGCGC-CCAAGGAGGTGGTGGCCGATGTGCTGCGGCGCG 271 Query 7279 CGCAGCCCTTCCTGAACTGGCTGCAGCAAGCCGAGGATGA 7318 ||||||||||||| | ||||| | ||||||||| || || Sbjct 270 CGCAGCCCTTCCTCGAGTGGCTACGGCAAGCCGACGAGGA 231 >seq54613 Length=3623 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||| || ||||| || | |||||| || ||||||||| || ||||| |||| Sbjct 2671 TACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG 2612 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || |||||||| ||||| ||||| || | ||||||||||| | | Sbjct 2611 AAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAG 2552 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| ||||| |||||| || ||||| | | |||||| | ||||| Sbjct 2551 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAA 2492 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || ||||| ||||||||||| | ||||| || || |||||||| || Sbjct 2491 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTT 2440 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| || ||||| |||| |||||| ||| || ||||||||||| || ||||| Sbjct 3572 CCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGAT 3513 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || |||||||| || || ||||| || || || || ||||| | ||| Sbjct 3512 AGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 3453 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| ||||| || ||||| | | ||||| ||||||| Sbjct 3452 ATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACT 3393 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || ||||| || || | || || || || |||||||| Sbjct 3392 TCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || |||||||||||||| ||||| | || | || |||||||| || || ||||| Sbjct 3077 TCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAG 3018 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || ||||| | |||| ||| |||||||| ||||| || ||||| Sbjct 3017 ATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTT 2958 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||||| |||||||||||| || || ||||| || || | || || || Sbjct 2957 TCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTTACA 2898 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 2897 AAGATCTGCAT 2887 >seq215 Length=8323 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4532 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 4473 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 4472 GGTAATATTTAGCCTTA 4456 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 7015 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 6956 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6955 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6921 >seq53481 Length=216 Score = 129 bits (142), Expect = 4e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTG 6497 ||||| |||||||| || || || | || ||||| ||||| ||||| ||||| || ||| Sbjct 209 TTTATCCGCAAGTTCGTCCTCTGCCCCGAGTGCGACAACCCCGAGACTGAGCTGATAGTG 150 Query 6498 TCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTG 6557 || || ||| | ||||||||||| || |||||||| |||||||| ||||||||| || Sbjct 149 TCCACGAAGCGGAACACCATCTCGCAAGGCTGCAAGGCGTGCGGGTACCATGGCCCCTTG 90 Query 6558 GATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || || || || || || || |||||||||||||| || || Sbjct 89 GAGTTCAACCATAAGCTGAATACTTTCATACTGAAGAACCCCCC 46 >seq55701 Length=1651 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| ||| | |||| || | ||| || || ||||||||||| ||||| Sbjct 70 CCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGAT 129 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || | || ||||| ||||| || || | ||| ||||| | ||| Sbjct 130 AGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 189 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| ||||| ||| |||||| ||| ||||| | | ||||| | ||| ||| Sbjct 190 ATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 249 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || |||||||| || || || | || || || || || ||||| Sbjct 250 TCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACAAAAATTTGCAT 296 >seq110694 Length=236 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/172 (72%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||| ||||||||||| || || | ||| ||||| || ||||| || | Sbjct 51 CATT-CCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGT 109 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||||||| || | || || | ||| ||||| ||||| || || | ||||| || | Sbjct 110 CAGACAATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGTCTG 169 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC 38257 || | |||||||||||| ||| ||| ||| ||||| | || ||||| Sbjct 170 GAGGAATACCTTCTTTGTCCTGAATCTTTGCCTTAACATTTTCGATTGTATC 221 >seq37844 Length=1442 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| |||| | |||||| ||||| || | ||| ||| || ||||||||||| || | Sbjct 286 TACCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGG 227 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | || || || || || ||||| |||||||| || | | Sbjct 226 CGAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAG 167 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || |||||||| || || || ||||| | | ||| || | ||||| Sbjct 166 GAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAA 107 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||||| || ||||| || || | || || || || |||||||| Sbjct 106 CTTCTAATGTGATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 58 >seq2515 Length=4501 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 38083 AATCATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142 ||| |||||| || | | |||| ||| | ||| | ||| ||||||||||| || | Sbjct 3701 AATAATTACCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTAT 3642 Query 38143 AATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGAT 38202 |||||||||| |||| | || |||| || || || ||||| || | ||||| || | Sbjct 3641 AATCAGACAATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGT 3582 Query 38203 CGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC 38262 | | || | ||||| || || || || || ||||| | | |||||| Sbjct 3581 CTGGTGGAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGG 3522 Query 38263 TTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || | ||||| ||||||||||| | ||| || ||||| || ||||| Sbjct 3521 CTTCCACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 3467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333495005117771