Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq7548 527 8e-145 seq139650 86.0 8e-12 seq105385 86.0 8e-12 seq52122 86.0 8e-12 >seq7548 Length=2633 Score = 527 bits (584), Expect = 8e-145 Identities = 1101/1621 (68%), Gaps = 43/1621 (3%) Strand=Plus/Minus Query 61832 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 61891 |||||| | ||||| | ||||| || || | | | ||| ||||| || |||| ||| Sbjct 2257 ATTTTACCTTTGTCTACGGTGAACTGTATAGCATTTGCTGCCGGTTTTGTGCGTAAGTAG 2198 Query 61892 TACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 61951 |||||||| ||||||| || | |||| ||| ||||| || ||||||||| | Sbjct 2197 TACATTCCTGTTTTTAAGCCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCA 2138 Query 61952 TAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTG 62011 || | || | || | ||| || || | |||||||||||| || ||||| ||||| || Sbjct 2137 TAGTTAGGCTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATGAAAGCTCCTCTA 2078 Query 62012 TCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCG 62070 || || ||||||| ||| ||| || || ||| ||||| | ||||| || || || Sbjct 2077 TCAGCCGCCATTTGTATGGACGTTTTCAATGAAATCTCCCATACGGTTTTGTACAAATCT 2018 Query 62071 CTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATCCT 62127 |||| | |||| |||| ||| | |||| | || ||||| | | ||| Sbjct 2017 CTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCGTTGTTGTATAAAATAAG 1959 Query 62128 ATTCTTGATCTCATCATTCCATAATTTT-CTCTCGGTTAAAACTCTAAGGAGATGCGGAT 62186 ||| || || || |||| |||||| | |||| ||| ||| || | || || || ||| Sbjct 1958 ATTTTTCATATCTTCATCCCATAAATCGGCTCT-GGTCAAATCTGTCAGAAGGTGATGAT 1900 Query 62187 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 62246 | ||||| ||||||||||||| || ||||| | |||||| || ||| | |||| Sbjct 1899 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATGTTTGATGTAAAGGGTT 1840 Query 62247 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62306 | | ||||||| | || || | |||||| || || || || || |||||||| || | || Sbjct 1839 CAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATAGGAGCTAACA 1780 Query 62307 ATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCA 62364 ||| | ||| | | ||| ||||| || ||||| ||||| || | |||| | ||| Sbjct 1779 ATAGAGAATTGCGCAAACC--ATGTTTTGCTATTTTTTCTTTGAGGGCAGCCCAGTCCCA 1722 Query 62365 AAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACG 62423 || |||| || |||||| ||||| | || | | || Sbjct 1721 CAGTTCCGTAGGAGTTTTGTCCCACATATCATATTGTAGGATACCTTGGCTCACTGGACT 1662 Query 62424 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62483 ||| |||| ||| ||||| ||||| || || |||| ||||||||| || ||||||| Sbjct 1661 C-CCTTCATAAGTACTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATG 1603 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAA 62543 |||| |||||||| ||||| || || | | ||| || | |||| | || || Sbjct 1602 CACCATAATAAATAGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTCACTTTCGT 1543 Query 62544 ATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 | || || | | | | | ||| | ||||| | ||| |||||||||||||||||||| Sbjct 1542 AAGG-TATTCTCATCAACACAAATGTATCTGCCATTCCCTGAACACCAATACCGATAGGC 1484 Query 62603 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62662 | || || |||| || ||| ||||| || | ||||||| | |||| ||| || | | Sbjct 1483 CGGTGCTTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACT 1424 Query 62663 TTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 62719 || || | |||| |||||||| | ||| || || | ||| ||||| |||| Sbjct 1423 TTGTTTAAATTTTGAGTGACAATTTTTGTGATT---TCTTTTAATTTTTTAAAATTAAAT 1367 Query 62720 CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA 62779 || || | ||||||||||| | ||| | || || ||||| || || || || ||| Sbjct 1366 TGCTTATGTTCAACAAACATGTTAAGTGCTATGGAAGCAAGATTGCATACTGCCACTTCA 1307 Query 62780 TTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 62836 | | || | | ||||| | | ||||||||||||||| ||||| || || || || Sbjct 1306 T---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCA 1250 Query 62837 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 62896 | ||| | |||||||||||| ||||||| ||||||||||| | ||| |||| |||||| Sbjct 1249 AGATTCTTTTGATTACTCTTCCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCA 1190 Query 62897 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 62956 || || | || | ||||||||| | ||||| | || |||| | | | | ||| Sbjct 1189 GTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTTTA 1132 Query 62957 TATCTC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63014 || || |||||| |||| ||| | ||| | | ||| ||||| ||||| | | Sbjct 1131 TAAATCGTTTTTCTTTTTCATATTTGGCATATAGTTCTTCAAACTCCTCTCCATAGCAGT 1072 Query 63015 TGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---A 63071 | || |||||||| |||| |||||||| | ||| || |||||||| | Sbjct 1071 CAGCGAGACCAGGACAGTCATGAGGACACATTAGACTCCAAACT---TCATCCTTTTCTA 1015 Query 63072 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTT 63131 ||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| || Sbjct 1014 CTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTT 955 Query 63132 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63191 | || || ||||| ||||| | | ||| | |||| | | || || | |||||| || | Sbjct 954 CTTCCTTACCTGTGTTCTTCCTTAAATCTAAGAACTCAAATATGTCTGCATGCCAAGGCT 895 Query 63192 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 63251 | ||||| || || | | || || ||||||||||| || ||||||| ||||| || | Sbjct 894 CTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAG 835 Query 63252 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGA 63311 | || ||||| |||||||||||||| | | |||||| || ||||| || || | | Sbjct 834 TATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTA 775 Query 63312 TATAGCTTCCACTGGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATTT 63368 |||| || ||| | || || || || || |||||| || || || || Sbjct 774 TATAAGAACCCTGGGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGATT 718 Query 63369 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 63428 |||| ||||| || ||| ||||||| |||||| | ||||| || || ||||| || ||| Sbjct 717 TAGAAATTAAAGCACATTGTTTTAAAGTATCAAAAATGCCTTCAATGCTATCGTCTTTCA 658 Query 63429 T 63429 | Sbjct 657 T 657 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 ||| |||||||| || ||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 210 CTTATTGTTTATCTTTAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 151 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 150 TTTAAAATCTCTGTCATAAACAATGGCAGAGTCCAATTTGTCCTTGTTTTT 100 >seq139650 Length=2376 Score = 86.0 bits (94), Expect = 8e-12 Identities = 242/369 (66%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 155184 TTATGACTCCA--ATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATT 155241 ||||||||||| |||| || |||||||| ||| | || | || || | | ||| | Sbjct 489 TTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCGGTTGAAATGGCTAT 432 Query 155242 TAAAAAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGT 155301 ||||||| |||| || |||||| ||||| | ||||| ||||| || | || ||||| Sbjct 431 GAAAAAATGTCCAAATGGCATGTTTTCTGAAATAAAATATGATGGAGAACGGGTTCAAGT 372 Query 155302 TCATAAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTTA 155361 |||||||| || ||||| | ||| | | | ||||||||| | || | Sbjct 371 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 312 Query 155362 TAAAGTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGT 155421 ||||| | || | ||||| || |||| || |||||| |||| | | | Sbjct 311 CAAAGTTAGTCATTTTAAAGATTATTTACCTAAGGCATTTCCTAAAGGAGATGATTTGAT 252 Query 155422 ATTGGATTCTGAAATTGTTCTTGTAGACGAACATAATGTA---CCGCTCCCGTTTGGAAG 155478 |||||| ||||| | || | ||||| | ||| || | || | || ||||| | Sbjct 251 TTTGGATGCTGAAGTACTTATGGTAGATGTCAATACTGGAAAGCCATTGCCTTTTGGTAC 192 Query 155479 TTTAGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGA 155538 |||||||| |||||| | ||||| |||| | || | | ||||| | | ||||| Sbjct 191 ATTAGGTATCCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATATATTTGA 132 Query 155539 CTGTTTGTA 155547 || || || Sbjct 131 TTGCTTATA 123 >seq105385 Length=1203 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || || || ||||| |||| ||| |||| |||||||| || || | ||| |||||||| Sbjct 558 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATAGCATAATCA 617 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||| | || || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 618 GGATGATCAGTGGTCTTAGTAGCTGCAATTTCAGCAGCAAGATTATCAAGCTCAGCAGTT 677 Query 63941 GTTACACCATTATATATTCC 63960 ||||||||| |||||| || Sbjct 678 GTTACACCAGAATATATGCC 697 >seq52122 Length=5755 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 ||||||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 5436 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAAGGATGCTTCAGCTTTTTTATACATCTGC 5377 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 || ||||| ||||||| ||||| || ||||| || Sbjct 5376 CAAATGTCTGGATATTGGATTGGGAATATAACGAA 5342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630814388983600