Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq121238 264 1e-65 seq54613 132 4e-26 seq2515 118 9e-22 seq37844 116 3e-21 seq110694 102 7e-17 seq55701 100 2e-16 seq172127 98.7 9e-16 seq10767 87.8 2e-12 >seq121238 Length=2101 Score = 264 bits (292), Expect = 1e-65 Identities = 725/1098 (66%), Gaps = 46/1098 (4%) Strand=Plus/Plus Query 57187 GCAATTTGCTTGTAATCAACCACGCCTTCCTCCCACGTGCCGTGCACAGGCCCACTTCCT 57246 ||||||| | |||| || ||||| || || | ||| || || | ||||| ||| | | Sbjct 393 GCAATTTCCCTGTAGTCGACCACTCCGTCTTGCCAAGTACCCTTGACAGGTCCAGTAGCG 452 Query 57247 TTACCCGTGAACGGATTGTTGTCCGTGTAGTCGTGCACACCCGTCCATCCTCGACCGTAC 57306 || || ||||| ||||||||||| ||| || || || || ||||| || ||||| ||| Sbjct 453 TTGCCTGTGAAGGGATTGTTGTCTTCGTAATCATGAACTCCAGTCCAACCACGACCATAC 512 Query 57307 ATGGCCACGCCAACCACTATTTTGTCAGCGGACACGTTCTGCGCTAACAAAGTGCGTACA 57366 ||||| || || || || || || | || ||| ||| |||||||| ||| Sbjct 513 ATGGCAACACCTACTACAATCTTCTTAGGATTCACTCCCTGTGCTAACAAGTATTTTACT 572 Query 57367 GCATTGTCTGTGGTATATGGTTCGCTAGGGTTCCACAGAGGCGCATA-AATGTTGGTTTG 57425 | ||| | || || | ||| | |||||||| |||||| || |||| || |||| Sbjct 573 CCGAAGTCAGAAGTGTAAGTTTCCTTGGGGTTCCATGCAGGCGCGTACAATGGTG-TTTG 631 Query 57426 ATAGCCCAAATTTGTGTTACTCCAGGCACCTTTAAAATCGTACGACATTAAGAATATGCT 57485 || || | | | || |||||||||||| || ||||| ||| ||||| || Sbjct 632 ATGTCCAAGAGTATCATTTGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATG 691 Query 57486 GTCGAGATATTTTTGCGCATGATTGTAATCGACAAGTTCGATTTTATCATTACCGGCGCC 57545 || | ||| ||||| || | |||| || |||| || ||||||||| || |||| Sbjct 692 ATCCATATAATTTTGAGCCTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCT 751 Query 57546 GATGGCTGTTGTGAGCAATAGTTTACGATCAGTTTCCAGTTCCAACTC---GTCCAACAT 57602 || || | || | | | || | || || ||| | | || || || | Sbjct 752 AATAGCAGAAGTTA--ATTCGTATT---TC--TTACCATTCTTAGCTGAGAGTTCATCGA 804 Query 57603 TAATCTCA----AATCTTTCAATAGCCGCACGTATGTTTCTCCGTCGCGACCAGGGTCGC 57658 |||||| | ||||||| | | || || || || || || | | Sbjct 805 GCATCTCACGTAATTCTTTCATCAAACTTACATAACAATCACCATCTTCT----GGACTC 860 Query 57659 CCAACAA-AGGATTAGCACCATTACCACCAGGAAATTCCCAATCAATGTCGACTCCATCA 57717 |||| ||| ||||| || || |||||||| || |||||||| || || || ||||| Sbjct 861 CCAAGGTCAGGGTTAGCGCCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCG 920 Query 57718 AAAAATTTCCACACTTTGATGTAGTCGCGCACCGATTGCACAAAA-GTGTTGCGAATAGT 57776 || |||||||| | | | || || || |||||||| ||||| | ||| Sbjct 921 AAGAATTTCCATGTTAAAAGAAACTCCTTGACTGACTGCACAAATCGTGTT-CTCTTAGA 979 Query 57777 GTCGTCGTGCATGAAAAAGAAG---GGATCCGATAAGGTCCAACCACCAATGGATGGCAA 57833 | ||| | |||||||||| ||||| | | ||||| |||||||| || || | Sbjct 980 TTTGTCA---ACGAAAAAGAAGAATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAG 1036 Query 57834 TACTTTTAGATGCGGATATGCTTTTTTGACCGCCATCAGTTGACCAAAATTACCTTTGTA 57893 | || | || || |||| ||||| | ||||| ||| |||||||| |||||||| Sbjct 1037 AATCTTCAAATCGGGTCGGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTA 1096 Query 57894 AGGTTCGTTCCAAGCCGATACTCCTTGTTGAGGCTTTTGTAGCGCCGCCCAAGGATCGTG 57953 ||||| ||||| | || | |||| ||| || ||||||| || ||||| ||||| || Sbjct 1097 GGGTTCATTCCATGAAGACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCATG 1156 Query 57954 TATCGTTACTTTGAAATCTTCTCGGCCTGCACACGAACGTTGCAACGCTTCAAAACTACC 58013 || | ||||||||||| || ||||| ||| || || || || |||| ||||| || Sbjct 1157 GATTGAGACTTTGAAATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGCC 1216 Query 58014 TGTAATCGTCTTTAGACTGTCGTTGATGCCATCGCCTCCGCAAATAGGCACGAAACCGTA 58073 | ||| |||| ||||| ||||| || || || |||||||| || | ||| ||||| Sbjct 1217 TTCGATCTCTTTTAAGCTGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGTA 1276 Query 58074 CAACAAATGAGTCAAATTGGGTACGGGTACTTTATCAACTGGATATTTACGACCGTACAC 58133 | | |||||| | ||| |||| |||| ||| || || |||| | | || || Sbjct 1277 GAGTAGATGAGTAAGATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATAAAC 1336 Query 58134 ACTCCACTCCACGAAATAAGCTCCCACGATCAATTTTTGGTCTGGTGACAAAGGTT--CA 58191 || ||| || ||||||||||| |||| ||| |||| || ||||| | Sbjct 1337 ACCCCATTCTACGAAATAAGCACCCA----CAACTTTT---------CCAGAGGTTTGCT 1383 Query 58192 TGA--GGTTTATTGTTTTCTTGCCAAGTATAGTGCAGAGGTTGTAGGTGAGCTCCGTCAG 58249 ||| || ||||| |||||| | ||||| | ||| || ||| ||| ||| || | Sbjct 1384 TGAATGGCTTATTTTTTTCTCCCATTGTATATTCCAGGGGAGGTAAATGACTTCCATCGG 1443 Query 58250 TGTCGGCAACGACAATTT 58267 | || || |||||||||| Sbjct 1444 TATCAGCGACGACAATTT 1461 >seq54613 Length=3623 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || ||| | ||||| | ||||| || | ||| Sbjct 3346 ATGCAGATCTTTGTAAAGACACTTACAGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 3405 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||| || |||||||| || || |||||||| Sbjct 3406 GATACAATTGAA--AATGTAAAAGCTAAAATCCAA-GACAAAGAGGGTATCCCACCTGAT 3462 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| |||| ||||| || || ||||||||||||| |||||| | || || Sbjct 3463 CAGCAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTAT 3522 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||||||||| || ||| | || || | || ||||||| Sbjct 3523 AATATTCAAAAAGAATCCACCCTTCATCTGGTACTGCGTCTGCGAGGAGG 3572 Score = 122 bits (134), Expect = 8e-23 Identities = 147/197 (75%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || ||| | ||||| | ||||| || | ||| Sbjct 2887 ATGCAGATCTTTGTAAAGACACTCACTGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 2946 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||| || |||||||| || || |||||||| Sbjct 2947 GATACAATTGAA--AATGTAAAAGCTAAAATCCAA-GACAAAGAGGGCATCCCACCTGAT 3003 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| |||| ||||| || || ||||||||||||| |||||| | || ||| Sbjct 3004 CAGCAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTATCTGACTAC 3063 Query 25176 AATATTCAAAAAGAATC 25192 ||||||||||||||||| Sbjct 3064 AATATTCAAAAAGAATC 3080 Score = 102 bits (112), Expect = 7e-17 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || | || |||||| |||| || | ||||| || | || Sbjct 2442 AATGCAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAAGCTTC 2501 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || | || |||| |||| ||| ||||| ||||| ||||| || || Sbjct 2502 CGATACTATTGAA--AATGTAAAAGCCAAAATTCAA-GACAAGGAAGGCATTCCTCCAGA 2558 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | |||||||| || || ||||||||||||| || || | || || Sbjct 2559 TCAACAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTTCTGACTA 2618 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||| || || || || ||| |||| || Sbjct 2619 CAACATCCAAAAGGAGTCTACCCTTCATCTAGTACT 2654 >seq2515 Length=4501 Score = 118 bits (130), Expect = 9e-22 Identities = 177/247 (72%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || ||||| | || |||||| |||| || | || ||||| | Sbjct 3464 ACAATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTTGAGGTGGAAGCC 3523 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||||| ||||| || | || |||| || ||| || || ||||| |||||||| Sbjct 3524 TCTGATACTATTGA--AAATGTAAAAGC-TAAGATCCAAGATAAGGAAGGTATTCCACCA 3580 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||| || || | || ||||| || || || ||||||||| || || || ||| Sbjct 3581 GACCAGCAACGATTGATCTTTGCTGGTAAGCAGCTAGAAGATGGACGTACATTGTCTGAT 3640 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA- 25231 || || |||||||| |||||||| | ||| | ||||| | || | ||||| ||||| Sbjct 3641 TATAACATTCAAAAGGAATCCACATTGCATCTTGTGCTGCGACTTCGCGGAGGTAATTAT 3700 Query 25232 TTATACT 25238 ||||||| Sbjct 3701 TTATACT 3707 >seq37844 Length=1442 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || ||| |||| || | || |||||| | | Sbjct 286 ATGCAGATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTAGAGGTGGAGCCAGCC 345 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| ||||| || || ||||| || || ||| Sbjct 346 GACACTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAA 405 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || || ||||| ||| ||||||||| ||||| || || ||||| Sbjct 406 CAGCGTCTTATCTTCGCAGGCAAGCAACTAGAAGATGGCCGCACCCTGTCTGACTACAAC 465 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| || || || ||||||||||| Sbjct 466 ATCCAAAAAGAGTCTACTCTGCATTTAGTGCT 497 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || ||| | |||||| | ||||| || | || Sbjct 58 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACAATCACATTAGAAGTTGAACCTTCG 117 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || | || |||| || | || |||||||| || ||||| || ||| Sbjct 118 GACACTATTGAA--AATGTTAAAGCCAAGATCCAA-GACAAAGAGGGTATTCCTCCAGAC 174 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | ||||| || || || || | || |||| ||| ||| | | ||| ||| Sbjct 175 CAACAACGTCTAATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCGCCGACTAC 234 Query 25176 AATATTCAAAAAGAATCCAC 25195 |||||||| ||||| || || Sbjct 235 AATATTCAGAAAGAGTCTAC 254 >seq110694 Length=236 Score = 102 bits (112), Expect = 7e-17 Identities = 135/185 (73%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 25044 GAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGG 25102 |||||||| | ||||| || ||||| | ||| |||| | ||| ||||||||||| Sbjct 236 GAAGTGGAAGCTTCTGATACAATCGAAAATGTTAAGGCAAAGATTCAG-GACAAAGAAGG 178 Query 25103 GATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 ||||| || ||||||||| || | |||||||| || || ||| | ||||||| ||||| Sbjct 177 TATTCCTCCAGACCAACAGAGGCTGATTTTTGCTGGAAAGCAACTCGAAGATGGCCGCAC 118 Query 25163 TGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGG 25222 || || || ||||| || || ||||| || | || |||||| | | ||||||| Sbjct 117 ATTGTCTGACTATAATATCCAGAAGGAATCAACTTTGCACTTAGTGTTGCGTTTAAGAGG 58 Query 25223 AGGAA 25227 |||| Sbjct 57 TGGAA 53 >seq55701 Length=1651 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||||||||| | || || || | || || | |||||||| | || Sbjct 297 AATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTC 238 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || || | ||| | |||| ||| || ||||| || ||||| || || | Sbjct 237 TGATACAATTGAAAATGTTAAGGCGAAAATTCAG-GATAAAGAGGGCATTCCCCCAGATC 179 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | |||||||||| || || || | ||||||| |||||| | || |||| Sbjct 178 AGCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACA 119 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| |||||||| || | || | || ||| | || ||||| || Sbjct 118 ATATTCAGAAAGAATCTACTTTGCACCTGGTACTACGTCTGAGAGGTGG 70 >seq172127 Length=1698 Score = 98.7 bits (108), Expect = 9e-16 Identities = 143/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 51090 ACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGC 51149 ||| ||||| |||||||| | || || || ||||||||||| || | | || || Sbjct 879 ACCAACATATCCATTAGGATCTCTGCCGTCAACACTGTAATGATCATTCAAGTAAATAGC 820 Query 51150 ATAACCCAATGCCATGTCTGC--ACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTAC 51207 | | ||| ||| |||| ||| || ||||||| | ||| |||||| ||||||| Sbjct 819 AAACTTCAACGCCTGTTCTGGTGACTGGG--TCCATTCTAAAATCTTCTTGCACCAGTAC 762 Query 51208 ATGCGCATGTAACCGTGCATCTTGCCCTCG--CAACGAAGCTGCGCTTGAGCCGAGTTCC 51265 ||||| | | |||||||||| |||||||| || | ||||| |||||||||||||| Sbjct 761 ATGCGTAGGAAACCGTGCATTTTGCCCTCTTTCACC--AGCTGTATTTGAGCCGAGTTCC 704 Query 51266 ACAATTCGTCGTGAGTTT 51283 | | || ||||| |||| Sbjct 703 ATAGGTCATCGTGTGTTT 686 >seq10767 Length=4660 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 25124 GATTATT-TTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTC 25182 ||||| | |||||||| |||||||| ||||||| || || | ||| ||||| |||| Sbjct 4182 GATTAATCTTTGCCGGTAAACAATTGGAAGATGGCCGAACCCTCTCCGACTACAACATTC 4241 Query 25183 AAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| |||||||| |||||||||||||| | || ||||| || Sbjct 4242 AAAAGGAATCCACACTACATTTAGTGCTCCGACTCAGAGGTGG 4284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431449265966915