Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq121238 255 6e-63 seq32923 104 2e-17 >seq121238 Length=2101 Score = 255 bits (282), Expect = 6e-63 Identities = 789/1208 (65%), Gaps = 31/1208 (3%) Strand=Plus/Plus Query 51245 GTCGCCCAGGCCCTCGTGCATGGCGTTCAGTAGGTCGCCGTTGTCAGCGTCGATTTCCCA 51304 || ||| || ||| || |||||| |||||||| || ||||| || |||||||||||||| Sbjct 167 GTTGCCGAGACCCATGTTCATGGCATTCAGTAGATCACCGTTATCGGCGTCGATTTCCCA 226 Query 51305 CGCAAACAATCCCGCCAACCCGTTCGCAAGCACGTACTGGCCCTTGGCGCGAACGGATCG 51364 ||||| | || | | | ||| || |||| ||||| | ||| |||| Sbjct 227 AGCAAAGAGACCGCCTAGCTTGTTATTTCTTACATACTTACCCTTCTCAATAACTGATCT 286 Query 51365 AGCGTTGTCGAACGTGATCAGGTTGCCCGC-GATCGGTTCGAAGCCGTACGCAGCCTCGG 51423 ||| || || | || | |||| || | ||| ||| |||| |||| | || | || Sbjct 287 AGCATTATCATAGGTTACAAGGTCTCCAGTTGAT-GGTCTGAAGACGTAAGGTGCTTGGG 345 Query 51424 CGATCAGATCGTAGTAGAACTCGTAGT--CTTTGACGAACT-CGTTCGCGATCTGCCGAT 51480 ||| ||||| | |||||| | | | |||| |||| | || || || | || | Sbjct 346 CGACATTGTCGTAATGGAACTCCCACTTGCCTTGAGCAACTTCATTGGCAATTTCCCTGT 405 Query 51481 AGTCGACCACCCCATTTTCCCAGGTGCCTTCGATGGGTCCGCCGGCGACGCCGCTGAACC 51540 |||||||||| || | || ||| || || | || ||||| ||| ||| |||| Sbjct 406 AGTCGACCACTCCGTCTTGCCAAGTACCCTTGACAGGTCCAGTAGCGTTGCCTGTGAAGG 465 Query 51541 AGTTCGGTTCGTAGTCGTAGCCGGTCACGTTCGACCAGCCGCGAGCGTACATCGCCACGC 51600 || ||| || ||||| | || | ||| || ||| | ||||| || || | Sbjct 466 GATT--GTT-GTCTTCGTAATCATGAACTCCAGTCCAACCACGACCATACATGGCAACAC 522 Query 51601 CGACGACGATCTTCT---GATTGCGCACGCCCTGTTCGAGAAGCGACGACACGGCATAGT 51657 | || || ||||||| |||| ||| |||||| | | | | || | ||| Sbjct 523 CTACTACAATCTTCTTAGGATT---CACTCCCTGTGCTAACAAGTATTTTACTCCGAAGT 579 Query 51658 CGGTGGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACAGTGTGGTCTGGTAGCCCA 51717 | | ||||| |||| | |||||||||| |||||| ||| || || || | || | Sbjct 580 CAGAAGTGTAAGTTTCCTTGGGGTTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAA 639 Query 51718 GATCGGTGTTGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCAACT 51777 || || ||||| ||||| ||||| ||||| |||| | |||||| | ||||| | Sbjct 640 GAGTATCATTTGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATAT 699 Query 51778 GCGTCTGCGCCCGAGCGTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGATGGCGC 51837 | || ||| |||||| || ||||| |||||||| | || ||||| || || Sbjct 700 AATTTTGAGCCTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAG 759 Query 51838 TGGTCAACAGGTA---CGAACGGTTCGTGGCGGCGCTCAACTCGTCGAGCATGTCGCGCA 51894 || || ||| | || ||| | || | | | || |||||||| || || | Sbjct 760 AAGTTAATTCGTATTTCTTACCATTCTTAGCTGAG---AGTTCATCGAGCATCTCACGTA 816 Query 51895 GCTCGGTCAAAAGCGTCACGTACGTCGCACCATCGCGATCGGGATCGCCCAGGTCGGGAT 51954 || ||| | | || || ||||||| || ||| || ||||| || | Sbjct 817 ATTCTTTCATCAAACTTACATAACAATCACCATCT---TCTGGACTCCCAAGGTCAGGGT 873 Query 51955 TGGCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACTTCCAAG 52014 | ||||||||||| || || |||||||| |||| || || || |||||||| ||||| | Sbjct 874 TAGCGCCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATG 933 Query 52015 TCAGCAGAAACTCGCGAACCGATTCGACGAAGGTTGCGCGTTTGCTC-GCGTCGTGCAGG 52073 | | |||||||| || || | || || || ||| || | | || | | Sbjct 934 TTAAAAGAAACTCCTTGACTGACTGCACAAAT----CGTGTTCTCTTAGATTTGTCAACG 989 Query 52074 AA---GAAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGCGAA 52130 || |||||| ||||| | |||||||| || || || ||||| |||||||| | Sbjct 990 AAAAAGAAGAATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAATCG 1049 Query 52131 GGATTGGCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGATCGTTCCAG 52190 || ||| ||||| | ||||| || ||||| || || ||||| || || ||||| Sbjct 1050 GGTCGGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCAT 1109 Query 52191 GCCGAGACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCACCTTA 52250 | || | ||| | || ||||| || | || ||||| ||||| || || | || || Sbjct 1110 GAAGACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACTTTG 1169 Query 52251 AAGTCCGACCTGCCCACGCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGGTTTC 52310 || ||| | ||| || || || || || |||| ||||||| |||||| ||| Sbjct 1170 AAATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCGATCTCTTTT 1229 Query 52311 AGGCTGTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATGCGAC 52370 | |||||| ||||| ||||| || ||||| || |||||||||||||| || ||||| | Sbjct 1230 AAGCTGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATGAGTA 1289 Query 52371 AGGTTCGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTCGACA 52430 || || || | || | |||| || || || || | ||||| |||||||| || Sbjct 1290 AGATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATAAACACCCCATTCTACG 1349 Query 52431 AAGTAGGC 52438 || || || Sbjct 1350 AAATAAGC 1357 >seq32923 Length=5192 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 38458 TGAAGCAGACGCCGCAACAGTTGGCCGAGGCCGGCTTCTACTATTCGGGCACCGGAGACC 38517 ||||||||| ||| | | | ||||| || || |||| ||| | ||| || ||| Sbjct 1707 TGAAGCAGAAGCCCGAGGAACTCGCCGAAGCGGGATTCTTCTACACCGGCCAGGGCGACA 1648 Query 38518 AGGTCAAATGTTTCTTTTGCGGCGGCGGCCTTAAGGACTGGGAGCCTGCGGACGATCCGT 38577 | || || |||| || | ||||||||| |||||||||||| | |||| |||| Sbjct 1647 AAACTAAGTGCTTCTACTGTGACGGCGGCCTCAAGGACTGGGAGAACGACGACGTGCCGT 1588 Query 38578 GGGCGCAGCACGCGCGCTGGTTCGACAGGTGCGCTTACGT 38617 ||| |||||||||||||||||||||| ||||||| ||||| Sbjct 1587 GGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGT 1548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535212606250360