Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq49004 143 3e-29 seq195943 134 2e-26 seq61775 131 2e-25 seq207028 129 7e-25 seq52122 129 7e-25 seq177287 127 2e-24 seq92037 127 2e-24 seq27467 127 2e-24 >seq49004 Length=3997 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 ||||||||||| || || || || | ||| |||||||| || | |||||||||||||||| Sbjct 291 TCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATTGAAGCA 232 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || || || || |||||||| || || || || ||||| || | |||||||| ||||| Sbjct 231 AAGCTGCCCGAGAAAAATATTCCCTCAACCGCCGCAAAAGCGATTATACGTTCTGCAAAT 172 Query 93254 TTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGT 93313 | || | || || | ||||| | || ||||| || || || ||||||| ||| ||| Sbjct 171 GTGGCCGTCTTGCTACCAATCCACTGCAATGCCCAGTCTGCCTTCTTCTTAACACACGGT 112 Query 93314 AGTGTTTCGATAGCGTTAAATAGGTAATC 93342 || || || ||||| || || | | |||| Sbjct 111 AGAGTCTCAATAGCATTGAACAAGAAATC 83 >seq195943 Length=2193 Score = 134 bits (148), Expect = 2e-26 Identities = 89/97 (92%), Gaps = 5/97 (5%) Strand=Plus/Minus Query 126259 ATTTACA---GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC- 126314 ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 248 ATTTACATGCGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCG 189 Query 126315 -TCGGGAGCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||||||||||||| Sbjct 188 AGAGGGAGCGTGGGTTCGAACCCCACACCTGACAAAT 152 >seq61775 Length=2265 Score = 131 bits (144), Expect = 2e-25 Identities = 81/86 (94%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1900 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 1959 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 1960 TGGGTTCGAACCCCACACCTGACAAA 1985 >seq207028 Length=1793 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1789 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 1730 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 1729 TGGGTTCGAACCCCACACCTGACAA 1705 >seq52122 Length=5755 Score = 129 bits (142), Expect = 7e-25 Identities = 107/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 93590 TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCT 93649 || |||||||| |||||||||| |||||||| |||||||| ||||| | ||| |||||| Sbjct 5427 TCTACTTCTTCTGCAGTCCAAAAGGATGCTTCAGCTTTTTTATACATCTGCCAAATGTCT 5368 Query 93650 TGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTAGT 93709 ||||||| ||||| ||||| || ||||| ||||||| || | || | ||||| ||| Sbjct 5367 GGATATTGGATTGGGAATATAACGAAACGTCTAGGGTTTTCCCTCAGCAGGGGCTCAAGT 5308 Query 93710 TGTGGGTCAAA 93720 ||||||||||| Sbjct 5307 TGTGGGTCAAA 5297 Score = 129 bits (142), Expect = 7e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 ||||||||||| ||||| |||||||| || || || || || || ||||| || | || Sbjct 5755 GAATGGACATTTTCCATGGCAATTTGAAAACCATAAAAGCACCTGGCTTCGGTCACTTGA 5696 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 || ||||| || || | ||| || | || ||||| || |||||||| || ||||| || Sbjct 5695 ACCTCTTGTGAGAACCGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCGAAG 5636 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 || || || | |||||| ||||||||||||||| |||||| | | |||||||| Sbjct 5635 AATGCTAAGACATGCTTGATAAAATGTTTCTCACAATCTTTTAATGTCTCCCAATC 5580 >seq177287 Length=991 Score = 127 bits (140), Expect = 2e-24 Identities = 79/84 (94%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 980 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 921 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 920 TGGGTTCGAACCCCACACCTGACA 897 >seq92037 Length=1930 Score = 127 bits (140), Expect = 2e-24 Identities = 84/91 (92%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 669 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 728 Query 126324 TGGGTTCGAACCCCACACCTGACAAA-TTAT 126353 ||||||||||||||||| |||||||| |||| Sbjct 729 TGGGTTCGAACCCCACATCTGACAAACTTAT 759 >seq27467 Length=2660 Score = 127 bits (140), Expect = 2e-24 Identities = 79/84 (94%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1911 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 1970 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 1971 TGGGTTCGAACCCCACACCTGACA 1994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554384572276840