Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq32923 134 1e-26 seq54613 125 6e-24 seq55701 89.7 4e-13 >seq32923 Length=5192 Score = 134 bits (148), Expect = 1e-26 Identities = 203/289 (70%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 105402 ATGCCCGGCCCTATACACCCTAAATACGGCTCCGAGTCTGCACGTTTAAAAACTTTTGAG 105461 |||||||||||| | ||||| |||| ||||||| | || || | | || Sbjct 1783 ATGCCCGGCCCTGTGCACCCGCGCTACGACTCCGAGGCGGCTCGCCTCCGCAGCTTCAGC 1724 Query 105462 GATTGGCCACTTAGTTTAAAACAAAGGCCAGAGCAATTGGCCGAAGCCGGTTTTTACTAC 105521 || ||||| | ||||| || || | ||| ||| || | |||||||| || || | |||| Sbjct 1723 GACTGGCCTCGCAGTTTGAAGCAGAAGCCCGAGGAACTCGCCGAAGCGGGATTCTTCTAC 1664 Query 105522 ACCGGCAAAGGTGATAAAGTCAAATGTTTTTATTGCGACGGCGGCCTTAAGGATTGGGCA 105581 |||||| | || || ||| || || || || || ||||||||||| ||||| |||| Sbjct 1663 ACCGGCCAGGGCGACAAAACTAAGTGCTTCTACTGTGACGGCGGCCTCAAGGACTGGGAG 1604 Query 105582 AACGCCGACGAACCGTGGGAGGAACATGCACGTTGGTTTGATCGCTGTTCGTTCGTAAAA 105641 |||| ||||| ||||||||| | || || || ||||| || || || | | ||| | Sbjct 1603 AACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTTCAG 1544 Query 105642 CTGGTCAAAGGACACGACTACGTGCAGCGGGTGATTAGCGAAGCATGCG 105690 |||||||| || | || || || ||| |||||| | || || |||| Sbjct 1543 CTGGTCAAGGGCCGAGAGTATGTCCAGAAGGTGATCACAGAGGCGTGCG 1495 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 105162 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 105221 || || ||||| || | || |||| || ||||| ||||||||||| || ||||| ||| Sbjct 2017 AATGGCTTCTATTACCTAGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 1958 Query 105222 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 105281 | ||| ||| | | ||||||||| || ||| || || | || |||||||| ||| Sbjct 1957 CTTATGAAATGGGTTGCGGGCGACGATCCCGCCCAGGACCACCAGCGGTGGGCGCCCCAG 1898 Query 105282 TGCCCGTTTTTGCG 105295 ||||| ||| |||| Sbjct 1897 TGCCCCTTTCTGCG 1884 >seq54613 Length=3623 Score = 125 bits (138), Expect = 6e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||||| |||||||||||||| | || || ||||||||||| ||||| ||| | Sbjct 2440 AAAATGCAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAAGCT 2499 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 |||| || ||| | |||||| |||||| ||||| |||||| |||| ||| Sbjct 2500 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 2559 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATT 111361 |||||| | | |||| ||| || || ||||| |||||| | | ||| | | || | Sbjct 2560 CAACAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTT--CTGACT 2617 Query 111362 ATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || || ||||| || ||||| || ||| |||| |||||||||| ||||| Sbjct 2618 ACAACATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 2669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || | || || ||||| || || | ||| ||| || Sbjct 3346 ATGCAGATCTTTGTAAAGACACTTACAGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 3405 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | |||||| ||||| |||||||| || | || ||||| Sbjct 3406 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGTATCCCACCTGATCAG 3465 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 || | ||||| | ||| || || ||||| |||||| || | ||||| | || |||| Sbjct 3466 CAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTAT--CTGACTATA 3523 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 |||| ||||||||||| || || ||| | || |||||||||| || |||| Sbjct 3524 ATATTCAAAAAGAATCCACCCTTCATCTGGTACTGCGTCTGCGAGGAGGCA 3574 >seq55701 Length=1651 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | ||||| |||||||| || ||||| |||| | Sbjct 524 ATGCAAATCTTCGTAAAAACCTTAACCGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 465 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | ||||| ||| ||| |||||||| ||| |||| |||||| Sbjct 464 GATACAATCGAGAACGTAAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGATCAA 405 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| || |||| || || || ||| | |||||| || || | || |||||| Sbjct 404 CAAAGACTAATTTTCGCCGGAAAGCAACTAGAAGATGGGCGTACATTGTCAGACTATAAT 345 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || | || |||||| |||| || | ||||| Sbjct 344 ATTCAGAAGGAATCAACTTTGCACTTAGTGCTGCGCCTTAGGGGTGG 298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || || | || ||||| || ||||| ||||| |||| | Sbjct 297 AATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTC 238 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | ||| | || || |||||| || ||||| ||| ||||| ||||| Sbjct 237 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 178 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||| ||||||| ||| || || || | |||||| ||| | | || || || Sbjct 177 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 118 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || ||||||||||| | || | || | |||||| | ||||| Sbjct 117 TATTCAGAAAGAATCTACTTTGCACCTGGTACTACGTCTGAGAGGTGG 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421205870552200