Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq121238 199 3e-46 seq55701 118 8e-22 seq54613 89.7 4e-13 seq110694 86.0 4e-12 seq54614 84.2 2e-11 seq37844 84.2 2e-11 >seq121238 Length=2101 Score = 199 bits (220), Expect = 3e-46 Identities = 412/601 (69%), Gaps = 18/601 (3%) Strand=Plus/Plus Query 84228 CCCAACGAC-GGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACACCGTC 84286 ||||| | | ||||| || |||||||| || || || ||||||||||| || ||||| || Sbjct 860 CCCAAGGTCAGGGTTAGCGCCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATC 919 Query 84287 GAAAAATTTCCATACTTGTAAAAACTCCTTAACCGAATTTACAAAAACGT-TTCTTTTTT 84345 ||| ||||||||| | | ||||||||| || || | ||||| ||| |||| || Sbjct 920 GAAGAATTTCCATGTTAAAAGAAACTCCTTGACTGACTGCACAAAT-CGTGTTCTCTT-- 976 Query 84346 CAACATTGTGCATGAAATAAAAC---GGGTCCGACAACGTCCATCCTCCTATGGACGGAA 84402 | |||| | |||| | || || || | | |||||| || || || || |||| Sbjct 977 -AGATTTGTCAACGAAAAAGAAGAATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAA 1035 Query 84403 GAATCTTTAGGTGCGGGTTCGCCAATTTAGCT-GCCATCAATTGTCCAAAATTGCCTTTA 84461 ||||||| | | ||||| | | || | | ||||||||| |||||||||||||| Sbjct 1036 GAATCTTCAAAT-CGGGTCGGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTG 1094 Query 84462 TACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCACGGATCG 84521 || ||||| ||||| | |||| || |||| || ||||||| || ||||| ||||| Sbjct 1095 TAGGGTTCATTCCATGAAGACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCA 1154 Query 84522 TGGATGGCAATTTTAAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTCGAAACTA 84581 ||||| | | ||| |||||| | || || || || ||||| || | | || |||||| Sbjct 1155 TGGATTGAGACTTTGAAATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTG 1214 Query 84582 CCGGGTATCACTTTGAGAGC-ATCGTTTATTCCATTACCGCCGCAAATGGGTATGAAACC 84640 || ||| |||| | ||| || || || || | |||||||||||| || ||||| || Sbjct 1215 CCTTCGATCTCTTTTA-AGCTGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCC 1273 Query 84641 GTACAACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCGCCCGTA 84700 ||| | | || | | ||| || | || | || || || || || | || Sbjct 1274 GTAGAGTAGATGAGTAAGATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATA 1333 Query 84701 CACTCCCCATTCAACAAAATACGCAGCAACCGTTTTATC----GTCTCTTCTGCCCGGTT 84756 || |||||||| || ||||| ||| | || ||| | || | | || || | Sbjct 1334 AACACCCCATTCTACGAAATAAGCACCCACAACTTTTCCAGAGGTTTGCT-TGAATGGCT 1392 Query 84757 TGTTGTTTTCCCGCCATGTATATTCCAGCGGAGCCAAATGACCGCCGTCGGTGTCTGCCA 84816 | || ||||| | | |||||||||||| |||| ||||||| || ||||| || || | Sbjct 1393 TATTTTTTTCTCCCATTGTATATTCCAGGGGAGGTAAATGACTTCCATCGGTATCAGCGA 1452 Query 84817 C 84817 | Sbjct 1453 C 1453 >seq55701 Length=1651 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || ||| | || ||||| || ||||| ||||| |||||| | Sbjct 297 AATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTC 238 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || ||||| |||||| ||||||||||| | || | | || Sbjct 237 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 178 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || |||||||| |||||||| || || || |||||| | ||| | | || ||||| Sbjct 177 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 118 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||| ||||||||| | || ||||| ||||| | |||| || Sbjct 117 TATTCAGAAAGAATCTACTTTGCACCTGGTACTACGTCTGAGAGGTGG 70 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||| ||||| || |||||||| || ||||| |||||| | Sbjct 524 ATGCAAATCTTCGTAAAAACCTTAACCGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 465 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| ||| ||| || |||||||| | ||| | | ||| Sbjct 464 GATACAATCGAGAACGTAAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGATCAA 405 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || || || || || |||||||||||| || || | || || ||| Sbjct 404 CAAAGACTAATTTTCGCCGGAAAGCAACTAGAAGATGGGCGTACATTGTCAGACTATAAT 345 Query 22014 ATTCAGAAGGAATCTACT 22031 |||||||||||||| ||| Sbjct 344 ATTCAGAAGGAATCAACT 327 >seq54613 Length=3623 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||| | || || ||||| || || | ||| |||||| | Sbjct 3346 ATGCAGATCTTTGTAAAGACACTTACAGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 3405 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || | || ||||| || ||||||||| | ||||| | Sbjct 3406 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGTATCCCACCTG---AT 3462 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATT 22008 || ||| | |||||||||||||| || ||| |||||||| | | ||||| | || | Sbjct 3463 CAGCAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTAT--CTGACT 3520 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | |||||||| || ||||| || |||||| ||||| | ||| | |||||||| Sbjct 3521 ATAATATTCAAAAAGAATCCACCCTTCATCTGGTACTGCGTCTGCGAGGAGG 3572 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || ||| | |||||| | ||||| ||||||||||| ||||| ||||| Sbjct 2439 CAAAATGCAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAAGC 2498 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | || || | | || | || |||||| || || || || | ||| | | Sbjct 2499 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGA 2558 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||| | | || |||||||| || ||| |||||||| || | | || || Sbjct 2559 TCAACAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTTCTGACTA 2618 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| || || ||||| ||||| |||||| | ||| | ||| | ||||| || Sbjct 2619 CAACATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 2669 >seq110694 Length=236 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 21907 ATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCT 21966 || ||||| ||| ||| || ||||| ||| | ||| | |||||||||| || || | Sbjct 208 ATGTTAAGGCAAAGATTCAGGACAAAGAAGGTATTCCTCCAGACCAACAGAGGCTGATTT 149 Query 21967 TTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAAT 22026 ||||||| || ||||| |||||| || || | || || ||||| |||||||||| Sbjct 148 TTGCTGGAAAGCAACTCGAAGATGGCCGCACATTGTCTGACTATAATATCCAGAAGGAAT 89 Query 22027 CTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 | ||| | || | || || |||||| |||| ||| Sbjct 88 CAACTTTGCACTTAGTGTTGCGTTTAAGAGGTGGA 54 >seq54614 Length=296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | ||| | ||||||| | || || |||||||| || || || || Sbjct 239 GACAAAGAGGGTATTCCTCCAGACCAACAACGTCTAATTTTTGCTGGTAAGCAGCTGGAG 180 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || | ||||| |||||||||||||| || |||||| | || ||||||| Sbjct 179 GATGGTCGTACGCTCGCCGACTACAATATTCAGAAAGAGTCTACTTTGCACTTGGTATTG 120 Query 22047 CGTTTACGAGGAGG 22060 ||| | |||||||| Sbjct 119 CGTCTCCGAGGAGG 106 >seq37844 Length=1442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||||||| | ||| | ||||||| | || || || ||||| || || || || Sbjct 151 GACAAAGAGGGTATTCCTCCAGACCAACAACGTCTAATTTTCGCTGGTAAGCAGCTGGAG 210 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| ||| | ||||| |||||||||||||| || |||||| | || ||||||| Sbjct 211 GATGGTCGTACTCTCGCCGACTACAATATTCAGAAAGAGTCTACTTTGCACTTGGTATTG 270 Query 22047 CGTTTACGAGGAGG 22060 ||| | |||||||| Sbjct 271 CGTCTCCGAGGAGG 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356572116467314