Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq121238 187 2e-42 seq54613 122 7e-23 seq37844 118 9e-22 seq2515 107 2e-18 seq55701 95.1 1e-14 >seq121238 Length=2101 Score = 187 bits (206), Expect = 2e-42 Identities = 465/694 (67%), Gaps = 23/694 (3%) Strand=Plus/Minus Query 20272 AAAGGAGGCAAATACAACATGACCGTGAAACTTTGCAATGTTGACGGCTGTTCAACAAGC 20331 ||||| || | |||| | ||||| ||| |||||||||||| || || || ||||| Sbjct 1531 AAAGGTGGAAGATACCAAATGACAGTGGAACTTTGCAATGAAGATGGTTGCAGCTCAAGC 1472 Query 20332 AGCGCGGTTCAGGTCACCATCGCCGACACCGATGGATCTCATTTAAAACCTTTGATTTAT 20391 | | | | |||| || ||||||||| ||||||| || || ||| Sbjct 1471 GATCCCACCGAAATTGTCGTCGCTGATACCGATGGAAGTCATTTACCTCCCCTGGAATAT 1412 Query 20392 GACTACATTG----AAAACAATAAACGTTTCGAG-AAGCGTACCGATAAAATCATTGCTG 20446 ||| || |||| ||||| | ||| || || | | || ||| | | | || Sbjct 1411 ----ACAATGGGAGAAAAAAATAAGCCATTCAAGCAAACCTCTGGA-AAAGTTGTGGGTG 1357 Query 20447 CATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTACCCGTTC 20506 | ||||| ||||||||||| ||||||||||| |||| || || || |||| | | Sbjct 1356 CTTATTTCGTAGAATGGGGTGTTTATCCTAGGAAATTCCCTGTGGATCGTATACCTATAC 1297 Query 20507 CCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTATCAACG 20566 | ||| | ||||||| || || ||||| | |||||||||||||| || |||||||| | Sbjct 1296 CTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGCGGTGACGGTATCAATG 1237 Query 20567 AC-GCGTTAAAGTTGTCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGCGCGGGC 20625 || || | |||| || || | |||| ||| || || || || || ||| Sbjct 1236 ACAGCTTAAAAGAGATCGAAGGC----AGTTTCCAAGCATTACAGCGATCTTGTAGCGGC 1181 Query 20626 CGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCACAAAAA 20685 || || |||| ||||| | || || ||||| ||||| || |||| |||||||||| | Sbjct 1180 CGCGAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTACAAAAACCACAAAGA 1121 Query 20686 GGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCAACGAAA 20745 ||| | || || ||||| ||||| |||||||| || ||||| || |||||| | ||| Sbjct 1120 GGATTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAATTGATGTCTCTCAAA 1061 Query 20746 CTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTATCCGATCCG 20805 | || || || | || | || || || || || |||||||| | | ||||| Sbjct 1060 CAAGCCCGACCCGATTTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCTGATCCA 1001 Query 20806 TTTTATCATATGCACGATCCGATCGTACG---CCAAGTTTTCATCGATTCTGTGGAAGAG 20862 || | || | | | | ||| || | || | ||| | | || || | ||| Sbjct 1000 TTCT-TCTTTTTCGTTGACAAATC-TAAGAGAACACGATTT-GTGCAGTCAGTCAAGGAG 944 Query 20863 TTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCCGGGAGGC 20922 ||| | || || ||||||||||| || || ||||| || || |||||||| || || ||| Sbjct 943 TTTCTTTTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGC 884 Query 20923 AAAGGTGCGAATCC-GAACGTGGGCGATCCCGAA 20955 ||||| || || || || | |||| | ||| ||| Sbjct 883 AAAGGCGCTAACCCTGACCTTGGGAG-TCCAGAA 851 >seq54613 Length=3623 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | || |||| ||| | ||||| || ||||| |||||||| || Sbjct 2672 ATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 2613 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| | ||| || ||||| | || | ||| ||||| || ||| Sbjct 2612 GAAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGA 2553 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||| || ||||| | ||||| || |||| | ||| Sbjct 2552 GGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCA 2493 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || || || ||||| |||||||||||||| Sbjct 2492 ACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT 2443 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 114189 GATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCG 114248 |||||||||||||| ||||| || | || ||| |||||| | ||| |||||||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 114249 TAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC 114308 |||| |||||||| || || || || ||||| |||||||| || || ||||| Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 114309 TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTT 114368 | ||||| || || | || ||| || || | || | ||||| || || || || ||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 114369 ACAAAAATCTGCAT 114382 ||||| |||||||| Sbjct 2900 ACAAAGATCTGCAT 2887 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || || | ||| | || |||||||||||||| || || || Sbjct 3575 ATGCCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCA 3516 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| |||||| | ||| |||||||| |||| |||||||| || || || Sbjct 3515 GATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 3456 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || |||||||| || || ||||| | ||||| || || | || ||| Sbjct 3455 GGGATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCA 3396 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || || |||||||| |||||||| Sbjct 3395 ACTTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 82.4 bits (90), Expect = 6e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | ||||| || | || || || ||||| |||||||| || Sbjct 3347 ATACCTCCTCGCAGACGGAGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCC 3288 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| |||||| ||||| || || ||| |||| ||||||||||| || ||| Sbjct 3287 GATAAGGTACGGCCATCTTCCAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGA 3228 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTC 114322 ||||| || || ||||| ||||| || | | ||||| |||||| Sbjct 3227 GGAATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGTGTC 3178 >seq37844 Length=1442 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | |||||||| | ||||| |||||||| |||||||| || Sbjct 515 ATACCACCACGAAGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCA 456 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| ||||| || || ||| |||| ||||||||||| || || Sbjct 455 GACAGGGTGCGGCCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGG 396 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | ||||| ||||||| | || Sbjct 395 GGAATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCC 336 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| || || || || || |||||||||||||| Sbjct 335 ACCTCTAAAGTAATGGTTTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq2515 Length=4501 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 || |||| || || |||| || || | ||| | || ||||| ||||||||||| |||| Sbjct 3698 AATTACCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAAT 3639 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | || ||||| |||||| || || |||||||| |||| | || || ||||| | Sbjct 3638 CAGACAATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTG 3579 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | ||||| ||||| || || ||||| ||||| | ||||| || || | || || Sbjct 3578 GTGGAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTT 3519 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | ||| | ||||| || || || || || || ||||| ||||| Sbjct 3518 CCACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 3467 >seq55701 Length=1651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 ||||| || | || ||||| || ||||| || || || || ||||| |||||| Sbjct 316 ACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACGCCCATCTTCT 375 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 ||||| || || ||| | || || | ||||| || ||||||||||| |||||||| | Sbjct 376 AGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTCTTTGTCCTGA 435 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||| |||| | || | || || | | ||| || |||| || | ||||| Sbjct 436 ATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTC 495 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||| | |||||||| || || |||||| Sbjct 496 CCGGTTAAGGTTTTTACGAAGATTTGCATG 525 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| ||||| ||||| || | ||| || ||||||||| || || ||| Sbjct 100 GTAGATTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCTTCAAGCTGCTTTCCA 159 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || || | || || || || |||||||| ||||| || ||| ||| | || Sbjct 160 GCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAAT-TTTCGCCTT 218 Query 114306 AGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | ||||| || || | | ||| || |||| || | || ||||| || || || Sbjct 219 AACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTCTTGCCTGTAAGTGT 278 Query 114365 TTTTACAAAAATCTGCAT 114382 ||||||||||| ||||| Sbjct 279 CTTTACAAAAATTTGCAT 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418312868052492