Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq215 152 4e-32 seq55701 91.5 1e-13 seq172127 86.0 5e-12 >seq215 Length=8323 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 868 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 809 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 808 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 771 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 868 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 809 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 808 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 771 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 115342 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 115392 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 930 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 879 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 114145 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 114195 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 930 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 879 >seq55701 Length=1651 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || |||||||| | || | || ||||||||||| || || |||| | Sbjct 298 CCACCCCTAAGGCGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGAC 357 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| ||| | || || | |||||| ||||| || || || | || ||||| || Sbjct 358 AATGTACGCCCATCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGA 417 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || |||||||||| ||| ||| ||| | | ||| | |||||| || ||| Sbjct 418 ATGCCCTCTTTGTCCTGAATCTTTGCCTTTA-CGTTCTCGATTGTATCAGAAGCTTCCAC 476 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAATATGT 34138 ||| | || || ||||| ||||||| ||||| || ||||||||||| | ||| ||| Sbjct 477 TTCCAATGTGATGGTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCATGATGAATCTGT 535 >seq172127 Length=1698 Score = 86.0 bits (94), Expect = 5e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 37827 ACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCAT 37886 || |||||| | | |||||| |||||||||| ||||| ||| ||||| || ||||| Sbjct 688 ACACACGATGACCTATGGAACTCGGCTCAAATACAGCTGGTGAAAGAGGGCAAAATGCA- 746 Query 37887 CAGTATA-TGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGAC 37945 | || | | |||||||| ||||||||||| ||||| |||||| | | | |||| Sbjct 747 CGGTTTCCTACGCATGTACTGGTGCAAGAAGATTTTAGAATGGACCCA--GTCACCAGAA 804 Query 37946 C--GCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCC 38003 | ||| | || | || ||||| | |||||| | ||||| | ||||| | ||||| Sbjct 805 CAGGCGTTGAAGTTTGCTATTTACTTGAATGATCATTACAGTGTTGACGGCAGAGATCCT 864 Query 38004 AACGGTTACGTCGG 38017 || || || || || Sbjct 865 AATGGATATGTTGG 878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395340898864282