Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq54613 163 7e-35 seq37844 123 6e-23 seq2515 118 2e-21 seq55701 107 5e-18 >seq54613 Length=3623 Score = 163 bits (180), Expect = 7e-35 Identities = 176/232 (76%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||||| ||||||| ||| ||||||||| |||||||||| Sbjct 3576 CATG-CCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGT 3518 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||||||||| || || || ||||| |||||||| ||| | Sbjct 3517 CAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAG 3458 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| || ||||| || |||||||| ||||| || ||||| || | ||| | || Sbjct 3457 GTGGGATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTT 3398 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| | ||||| || ||||| || || ||||| || || |||||||| Sbjct 3397 CAACTTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 143 bits (158), Expect = 6e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| ||||| | || ||||| || ||||||||||| || || || || Sbjct 3078 TTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAA 3019 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| |||||||| ||| | |||||| || ||||| || |||||||| ||||| || || Sbjct 3018 GATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATT 2959 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||| ||||| | ||||| || ||||| || || ||||| || Sbjct 2958 TTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTTAC 2899 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 2898 AAAGATCTGCAT 2887 Score = 132 bits (146), Expect = 1e-25 Identities = 173/238 (73%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| ||||||| || || |||||||| || ||||| | Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2610 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || || ||||||||||| ||||| || || |||| ||| ||||| |||| Sbjct 2609 AGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTG---ATCTGGA 2553 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || || || ||||| ||||| || ||||| |||| |||| | ||| Sbjct 2552 GGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCA 2493 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTAT 288481 ||||| | || || || || || || || || ||||| || ||||||||| || ||| Sbjct 2492 ACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTTGATAT 2435 >seq37844 Length=1442 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||| | || ||||||||||| || ||||| | Sbjct 512 CCACCACGAAGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGAC 453 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||||| ||| || ||||||||||| ||||||||||| ||||||| Sbjct 452 AGGGTGCGGCCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTG---ATCTGGG 396 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| || || || || ||||| |||| ||| | || Sbjct 395 GGAATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCC 336 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || || ||||| || || ||||| || || |||||||| Sbjct 335 ACCTCTAAAGTAATGGTTTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| ||||||||||| || || || || || | || || || ||||| Sbjct 248 TCTTTCTGAATATTGTAGTCGGCGAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAA 189 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| ||||| ||| || || || ||||| || ||||| || ||||| || Sbjct 188 ATTAGACGTTGTTG---GTCTGGAGGAATACCCTCTTTGTCTTGGATCTTGGCTTTAACA 132 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| || | ||| ||||| | ||||| || ||||| || || ||||| Sbjct 131 TTTTCAATAGTGTCCGAAGGTTCAACTTCTAATGTGATTGTTTTCCCTGTGAGTGTCTTT 72 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 71 ACAAAGATCTGCAT 58 >seq2515 Length=4501 Score = 118 bits (130), Expect = 2e-21 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| || || ||||| | ||| ||| ||||| || ||||| || | Sbjct 3693 CCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGAC 3634 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||||| || || || || ||||||| || || || ||| Sbjct 3633 AATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGA 3574 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| ||||| || ||||| || ||||| |||| ||| | ||| || Sbjct 3573 ATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCACC 3514 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCTAA 288486 || || || || || || || || || ||||||||||| || |||||| || | | ||| Sbjct 3513 TCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGGGACTGTAA 3454 Query 288487 TAT 288489 ||| Sbjct 3453 TAT 3451 >seq55701 Length=1651 Score = 107 bits (118), Expect = 5e-18 Identities = 142/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || ||||| ||||| | || |||||||| ||||| | || ||||| || || Sbjct 105 TTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAA 164 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | || ||| |||||| || || ||||||||||| |||||||| || || Sbjct 165 AATAAGTCTTTGCTGA---TCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAAC 221 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | ||| | ||| ||||| | || || ||||| || || || ||||| Sbjct 222 ATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTCTTGCCTGTAAGTGTCTT 281 Query 288459 GACGAATATCTGCATT 288474 || || || |||||| Sbjct 282 TACAAAAATTTGCATT 297 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||||||||| | | || || || ||||||| ||| ||||| ||||| Sbjct 333 TTCCTTCTGAATATTATAGTCTGACAATGTACGCCCATCTTCTAGTTGCTTTCCGGCGAA 392 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | ||||| |||| || || || ||||| ||||| || || || || || Sbjct 393 AATTAGTCTTTGTTG---ATCTGGAGGAATGCCCTCTTTGTCCTGAATCTTTGCCTTTAC 449 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | ||| | ||| ||||| | ||||| || |||||||| | || || Sbjct 450 GTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCGGTTAAGGTTTT 509 Query 288459 GACGAATATCTGCATTATG 288477 ||||| || ||||| ||| Sbjct 510 TACGAAGATTTGCATGATG 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174277615977398