Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq121238 250 2e-61 seq7548 145 8e-30 seq55701 127 2e-24 seq2515 125 7e-24 seq54613 113 4e-20 >seq121238 Length=2101 Score = 250 bits (276), Expect = 2e-61 Identities = 647/974 (66%), Gaps = 19/974 (2%) Strand=Plus/Minus Query 27473 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGTAATTTTGCCGCGGACCGCGTACCGGCG 27532 || || || || ||||||||||| || | || || | | ||| || |||| Sbjct 1357 GCTTATTTCGTAGAATGGGGTGTTTATCCTAGGAAATTCCCTGTGGATCGTATACCTATA 1298 Query 27533 CCCAACCTGTCACATTTACTATACGGGTTCGTGCCGATATGCGGCGGCGACGGCATCAAC 27592 || || || | ||| |||| ||||| ||| | || || |||||||| ||||| ||||| Sbjct 1297 CCTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGCGGTGACGGTATCAAT 1238 Query 27593 GACAGCCTTAAAACTATTCCGGGTAGTTTCGAAGCGTTGCAAAAGTCGTGCGCGGGTCGT 27652 |||||| | ||| || || |||||| |||| || || || || || || Sbjct 1237 GACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCATTACAGCGATCTTGTAGCGGCCGC 1178 Query 27653 GAAAACTTTAAAGTGGCCATTCACGATCCGTGGGCTGCATTGCAAAAACCACAAAAAGGC 27712 || | || ||||| | || || ||||| ||||| ||||| ||||||||||||| ||| Sbjct 1177 GAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTACAAAAACCACAAAGAGGA 1118 Query 27713 GTTTCGGCTTGGACGGAACAATACAAAGGTAATTTTGGACAGTTAATGGCGATAAAGCGT 27772 | || | |||| |||| |||||||| |||||||| || || ||| | | || | Sbjct 1117 TTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAATTGATGTCTCTCAAACAA 1058 Query 27773 GCAA-ACCCGCATTTAAAAATTCTACCGTCCATAGGAGGGTGGACGCTGTCGGATCCATT 27831 || ||||| |||| || ||||| || || || || ||||||||||| | |||||||| Sbjct 1057 GCCCGACCCG-ATTTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCTGATCCATT 999 Query 27832 TTACTTTT---TTCACGACGCT-GGCAAACGCGCCACATTCGTCGAATCGGTTCGCGAAT 27887 | ||||| || || | || | ||| || ||| || | || || || | Sbjct 998 CTTCTTTTTCGTTGACAAATCTAAGAGAACACG----ATTTGTGCAGTCAGTCAAGGAGT 943 Query 27888 TTCTGCAAACTTGGAAATTTTTCGACGGCGTGGACATCGATTGGGAATTTCCTGGCGGTA 27947 |||| ||| |||||||| ||||| || || || ||||||||||| || ||||| || | Sbjct 942 TTCTTTTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCA 883 Query 27948 ACGGCGCAAACCC--ACTGTTAGGCGATCCCCAACGAGACGGT-TTAGTGTATGTGGTGT 28004 | ||||| ||||| || || || | ||| | ||| ||| | || ||||| | Sbjct 882 AAGGCGCTAACCCTGAC-CTTGGGAG-TCC---AGAAGATGGTGATTGT-TATGTAAGTT 829 Query 28005 TGTTGCGCGAACTTCGCGATATGCTCGATCAACTCGAACACCACACGGGCCGGCAATACG 28064 || || ||| | || || ||||||||| ||||| | | | || | |||||| Sbjct 828 TGATGAAAGAATTACGTGAGATGCTCGATGAACTCTCAGCTAAGAATGGTAAGAAATACG 769 Query 28065 AACTGACAAGTGCAATCGGCGCTGGCTACGACAAAATTGAGGTAGTTGATTACAACGAAG 28124 || | || ||| || ||||||| | || ||||| | || ||||| |||| | | | Sbjct 768 AATTAACTTCTGCTATTAGCGCTGGGTGGGATAAAATCCAAGTTGTTGACTACAGCAAGG 709 Query 28125 CGCAATCGTATTTGGACAAAATCTTTTTAATGAGTTATGATTTTAAAGGCGCTTGGTCCA 28184 | ||| ||| |||| | || || || |||||||| || || ||||| || ||||| | Sbjct 708 CTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAAGGTGCCTGGTCAA 649 Query 28185 ACTCGGATTTGGGCCATCAAACCGCTTTGTATGCGCCCGATTGGAAACCCGACGAGCGGT 28244 | | | || |||||||| | ||||| ||||| | ||||| ||| | || | Sbjct 648 ATGATACTCTTGGACATCAAACACCATTGTACGCGCCTGCATGGAACCCCAAGGAAACTT 589 Query 28245 ATACGACCGATTTTGCGGTGCGCTCGTTGCTTCTTCAAAAAGTACGTTCCGAAAAAATCG 28304 | || | || || | || | ||| | || ||| | | | || || | Sbjct 588 ACACTTCTGACTTCGGAGTAAAATACTTGTTAGCACAGGGAGTGAATCCTAAGAAGATTG 529 Query 28305 TGATCGGTGTGGCAATGTACGGTCGCGGTTGGAGTGGCGTATCGGAATATTTAAACGATA 28364 | | ||||| || ||||| ||||| ||||||| ||| || || || | || | | Sbjct 528 TAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGAGTTCATGATTACGAAGACAACA 469 Query 28365 ATCCCTTTACCGGCATCGCCACAGGCCCGGTGCCCGGCACTTGGGAAGACGGCGTCGTAG 28424 ||||||| || |||| ||| || || || || || |||||| ||||||| || || | Sbjct 468 ATCCCTTCACAGGCAACGCTACTGGACCTGTCAAGGGTACTTGGCAAGACGGAGTGGTCG 409 Query 28425 ATTACCGTCAAATT 28438 | ||| | ||||| Sbjct 408 ACTACAGGGAAATT 395 >seq7548 Length=2633 Score = 145 bits (160), Expect = 8e-30 Identities = 328/489 (67%), Gaps = 7/489 (1%) Strand=Plus/Minus Query 154624 TGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGAT 154683 |||||||||||| || | ||| | ||| || ||| ||| ||||| || || || |||| Sbjct 1296 TGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTCTTTTGAT 1237 Query 154684 TCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 | || |||| || || || || ||||| ||||| || || || || |||||||||| Sbjct 1236 TACTCTTCCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTGGG 1177 Query 154744 TTTCAATAATTG--TGCGAAACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTC 154801 ||| ||||||| | | | | | ||| | || ||||| ||||||| ||||| Sbjct 1176 CTTCTATAATTGACTTCCATA-ACTCTT-GAGCTCTGACTTGTTTTATAAATCGTTTTTC 1119 Query 154802 GCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGG 154861 | ||||||| | || |||| ||||||||| | || ||| | | ||| || Sbjct 1118 TTTTTCATATTTGGCATATAGTTCTTCAAACTCCTCTCCATAGCAGTCAGCGAGACCAGG 1059 Query 154862 ACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAA 154921 |||| | |||||||| | ||| | ||| | | || ||| | ||||||||||| Sbjct 1058 ACAGTCATGAGGACACATTAGACTCCAAACTTCATCCTTTTCTACTCTTTTCATAAACAG 999 Query 154922 ATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTT 154981 ||| || | ||| ||||| || |||| || | || | | ||||| || |||| Sbjct 998 ATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTGTT 939 Query 154982 TCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCAT 155041 | |||||| || || ||| ||||||| || ||||| |||||||| || | || | Sbjct 938 CTTCCTTAAATCTAAGAACTCAAATATGTCTGCATGCCAAGGCTCTAAGTAAATTGCAAA 879 Query 155042 CGCGCCTTTGCGT---TTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCG 155098 || || ||| ||||| |||||||| || | | || ||| || ||||| | Sbjct 878 TGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCT 819 Query 155099 CAACAATGG 155107 ||||| ||| Sbjct 818 CAACATTGG 810 Score = 89.7 bits (98), Expect = 5e-13 Identities = 284/435 (65%), Gaps = 4/435 (1%) Strand=Plus/Minus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 || || || || || || || |||| || | ||||| ||||||| || || |||||| Sbjct 1849 GTAAAGGGTTCAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATA 1790 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 || | ||| | ||| || |||||||| |||||||| || ||| | | ||| Sbjct 1789 GGAGCTAACAATAGAGAATTGCGCAAACCATGTTTTGCTATTTTTTCTTTGAGGGCAGCC 1730 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTC 154250 || | ||||| | ||||| || |||||| || ||||| | | ||| ||| Sbjct 1729 CAGTCCCACAGTTCCGTAGGAGTTTTGTCCCACATATCATATTGTAGGATACCTTGGCTC 1670 Query 154251 GCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTT-TGCCAAGTCGCAACTGGC 154309 | ||||| | |||| || ||| | || ||| ||| ||| || || ||||| || Sbjct 1669 ACTGGACTCCCTTCATAAGTACTGTATGCACC-TTCTTTTTCTGCTAATTCACAACTAGC 1611 Query 154310 TTCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTC 154369 |||||| || |||| || | ||||| ||||||| || | | | | ||||| || Sbjct 1610 TTCTAATGCACCATAATAAATAGTTTCAAATATTTGTTGATTAAGGAGTATTGCTTTCTC 1551 Query 154370 ACTTTCGTACGGCAATCCCAATATACA-AAAAGCATCGGCGAGCCCTTGAATGCCCACTC 154428 ||||||||| || | || | || ||| ||| | ||| || | || |||| || | | Sbjct 1550 ACTTTCGTAAGGTATTCTC-ATCAACACAAATGTATCTGCCATTCCCTGAACACCAATAC 1492 Query 154429 CAACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATAT 154488 | | || | ||| || | ||| || ||| || | | ||||||| | || | || Sbjct 1491 CGATAGGCCGGTGCTTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACAT 1432 Query 154489 CGATAATTTTATTTA 154503 | || | ||| |||| Sbjct 1431 CAATGACTTTGTTTA 1417 >seq55701 Length=1651 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| ||||| ||||| || | | ||||| | |||||||||||||| || Sbjct 100 GTAGATTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCTTCAAGCTGCTTTCCA 159 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| || | ||||| || || ||||| || ||||| || || ||||| ||| Sbjct 160 GCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTA 219 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||||| || |||||||| | ||| | |||||||| || | || Sbjct 220 ACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTCTTGCCTGTAAGTGTC 279 Query 64427 TTTACGAAAATTTGCATT 64444 ||||| |||||||||||| Sbjct 280 TTTACAAAAATTTGCATT 297 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||||| || | || ||||| || ||||| || || |||| | || ||| | ||| Sbjct 313 AGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACGCCCATCT 372 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| ||||| |||| || | || || || |||||||| || ||||| || Sbjct 373 TCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTCTTTGTCC 432 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| |||||| ||| | ||||||| || |||||||| | || | ||| Sbjct 433 TGAATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTT 492 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || ||||||||||| |||||||| Sbjct 493 TTCCCGGTTAAGGTTTTTACGAAGATTTGCAT 524 >seq2515 Length=4501 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || ||||| ||||| | || ||||| ||||||||||| ||||| | Sbjct 3694 ACCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGA 3635 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || ||| | || | || |||||||| || || Sbjct 3634 CAATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGG 3575 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || |||||| || | |||||| ||| ||||| Sbjct 3574 AATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCAC 3515 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||| || || || | || || ||||||||||||||| Sbjct 3514 CTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 3466 >seq54613 Length=3623 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || |||||||||||||| || || || | | ||||| | ||| Sbjct 3557 AGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGATAGTGTGCGACCATCT 3498 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || ||| | || || |||||||| || || || || || ||||| ||| Sbjct 3497 TCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATACCCTCTTTGTCT 3438 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| |||||| || | ||||||| ||| || ||||||| ||| | || Sbjct 3437 TGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTT 3378 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || ||||| || || ||||| Sbjct 3377 TTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 |||||||||||||| ||||| || | | ||||| | ||||| | ||||| || ||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 | || || |||||||| || || || || || ||||| ||||| ||||| |||||| Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 || | ||||||| ||| || ||||||| ||| | || || || || | || ||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 64430 ACGAAAATTTGCAT 64443 || || || ||||| Sbjct 2900 ACAAAGATCTGCAT 2887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497422998240040