Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq121238 156 4e-33 seq54613 111 2e-19 seq37844 104 2e-17 seq32923 87.8 2e-12 seq110694 82.4 8e-11 >seq121238 Length=2101 Score = 156 bits (172), Expect = 4e-33 Identities = 343/507 (68%), Gaps = 8/507 (2%) Strand=Plus/Minus Query 27995 aaaaTTGTGGCCGCCTATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTCCCGTCGAC 28054 ||| |||||| || |||||||| || ||||| || |||| || | || || || || Sbjct 1369 AAAGTTGTGGGTGCTTATTTCGTAGAATGGGGTGTTTATCCTAGGAAATTCCCTGTGGAT 1310 Query 28055 AAAGTGCCCGCGCCCAACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGC 28114 | || || || || | || | || ||||| ||| | || || |||||||| Sbjct 1309 CGTATACCTATACCTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGCGGT 1250 Query 28115 GACGGCATAAACGACGCCCTCAAGACCGTTCCC-GGCAGTTTCGAGGCGCTGCAGCGCTC 28173 ||||| || || ||| | | || | | || ||||||||| | || | ||||| || Sbjct 1249 GACGGTATCAATGACAGCTTAAA-AGAGATCGAAGGCAGTTTCCAAGCATTACAGCGATC 1191 Query 28174 GTGCGCCGGGCGCGCCGACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAA 28233 || ||| |||| || ||||| || | ||||| ||||| ||||| || | || || Sbjct 1190 TTGTAGCGGCCGCGAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTACAAAA 1131 Query 28234 GCCGCAAAAGGGCGTCTCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGAT 28293 || |||| || | ||| | ||||| || || ||||||||||| ||||| |||||||| Sbjct 1130 ACCACAAAGAGGATTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAATTGAT 1071 Query 28294 GAGCGTCAAATTAGCCAATCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCT 28353 | ||||| |||| || | |||||| | || | || || || || |||||||| Sbjct 1070 GTCTCTCAAACAAGCCCGACCCGATTTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCT 1011 Query 28354 GTCGGACCCATTCTTTCACATGCACGACG-CGACCGTGCGCCAA-ACG-TTCATCGATTC 28410 | || |||||||| | | || | | | | | || ||| || | | || Sbjct 1010 TGCTGATCCATTCTT---CTTTTTCGTTGACAAATCTAAGAGAACACGATTTGTGCAGTC 954 Query 28411 CGTCGTGGACTTTCTGCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTT 28470 ||| ||| ||||| | || ||||| |||||||| || || || |||||||||||||| Sbjct 953 AGTCAAGGAGTTTCTTTTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTT 894 Query 28471 TCCGGGCGGCAAAGGAGCCAATCCCGA 28497 || || |||||||| || || || || Sbjct 893 CCCTGGTGGCAAAGGCGCTAACCCTGA 867 >seq54613 Length=3623 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| |||| ||| | | | ||||||||||| ||||||||||| Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2610 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||| || || | | | || | ||| ||||| || ||||| Sbjct 2609 AGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 2550 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||||| | ||| | || |||| | || || Sbjct 2549 ATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAAC 2491 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || || ||||| |||||||||||||| Sbjct 2490 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT 2443 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||| | ||||| || | | | ||||||||||| ||||||||||| Sbjct 3344 CCTCCTCGCAGACGGAGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAT 3285 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || ||||| || || | |||| ||||||||||| || ||||| Sbjct 3284 AAGGTACGGCCATCTTCCAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGAGGA 3225 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | ||| | |||||| | | ||| ||| Sbjct 3224 ATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGTGTCAGATGCCTCTACC 3165 Query 138568 TC 138569 || Sbjct 3164 TC 3163 >seq37844 Length=1442 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||||||| | | ||||| ||||| ||||||||||| | Sbjct 512 CCACCACGAAGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGAC 453 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || ||||| || || | |||| ||||||||||| || || || Sbjct 452 AGGGTGCGGCCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGA 393 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | ||| | ||||||| | ||||||| Sbjct 392 ATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACC 333 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || || || |||||||||||||| Sbjct 332 TCTAAAGTAATGGTTTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq32923 Length=5192 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 124741 GGCTTCTACTACATGGGCGTCGGCGACGAAGTGCGTTGCGCTTTCTGCAAAGTCGAAATT 124800 |||||||| ||| | ||| |||||| ||||| || ||||| || || ||||| ||| || Sbjct 2014 GGCTTCTATTACCTAGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAACTT 1955 Query 124801 ATGCGATGGCAGCCCGGCGACGAT-CCGCTAACGGACCACAAACGATGGGCGCCTCAGTG 124859 ||| |||| | ||||||||| |||| | ||||||| | || |||||||| ||||| Sbjct 1954 ATGAAATGGGTTGCGGGCGACGATCCCGCCCA-GGACCACCAGCGGTGGGCGCCCCAGTG 1896 Query 124860 TAAATTTCTGCG 124871 |||||||| Sbjct 1895 CCCCTTTCTGCG 1884 >seq110694 Length=236 Score = 82.4 bits (90), Expect = 8e-11 Identities = 110/152 (72%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||||| ||||| || | |||| ||||| || || || ||||| | Sbjct 55 CCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCAGAC 114 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || |||||||| || || | | | || || | ||||||||| ||||| Sbjct 115 AATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGAGGA 174 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 |||||||||||||| ||| | |||| |||| Sbjct 175 ATACCTTCTTTGTC-CTGAATCTTTGCCTTAA 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494055638969520