Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq54613 170 1e-37 seq37844 113 3e-20 seq2515 102 6e-17 >seq54613 Length=3623 Score = 170 bits (188), Expect = 1e-37 Identities = 180/236 (76%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | | |||| |||||||||||| || ||||| |||||||| || Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2610 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||||||||| || ||||| | |||||||| ||||| || ||| Sbjct 2609 AGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 2550 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||||||| ||||||| |||| ||||||||| | ||| || Sbjct 2549 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACT 2490 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAT 15185 || || |||||||||||||| || || ||||| |||||||| ||||| ||||| || Sbjct 2489 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT-TTTGATAT 2435 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| ||||||| | | || | ||||||||| || |||||||| || || || || Sbjct 3574 TGCCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAG 3515 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | ||||||||||| || ||||| | || | |||||| || || || Sbjct 3514 ATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTG 3455 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || || ||||| ||||| ||||||| |||| || ||||| ||| | Sbjct 3454 GGATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAA 3395 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || || ||||| ||||| || || |||||||| || |||||| Sbjct 3394 CTTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCATA 3345 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 14983 GAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCG 15042 || |||||||| || ||||| || || | | | ||||||||||| || ||||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 15043 TATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACA 15102 | || | |||||| || || ||| || || || ||||| ||||| ||||||| Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 15103 ATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTT 15162 |||| || ||||| ||| || ||||| || || ||||| || || || || ||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 15163 ACAAAAATTTGCATA 15177 ||||| || |||||| Sbjct 2900 ACAAAGATCTGCATA 2886 >seq37844 Length=1442 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||||||| || ||||| |||||||| |||||||| || || | | | |||||| Sbjct 494 ACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCT 435 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||| ||| | || | ||||||||| || ||||| || |||||||| Sbjct 434 AGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCTTGG 375 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| |||| ||||| ||| || || ||||| ||||||||||| Sbjct 374 ATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTAATGGTTTTC 315 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || |||||||| |||||| Sbjct 314 CCAGTAAGTGTCTTAACAAAAATCTGCATA 285 >seq2515 Length=4501 Score = 102 bits (112), Expect = 6e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAATTGTTTGC 15037 || || || ||||| ||||| ||||| || ||| || | ||||||| || || | Sbjct 3663 GTGGATTCCTTTTGAATGTTATAATCA--GACAATGTACGTCCATCTTCTAGCTGCTTAC 3606 Query 15038 CAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTT 15097 |||| | ||||| || || ||||| |||||| |||||||| || || || || Sbjct 3605 CAGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTAGCTT 3546 Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157 ||||| |||| |||||||| ||| || || | ||||||||||||||| || || | Sbjct 3545 TTACATTTTCAATAGTATCAGAGGCTTCCACCTCAAGGGTAATGGTTTTACCCGTAAGGG 3486 Query 15158 TTTTTACAAAAATTTGCAT 15176 | || || ||||||||||| Sbjct 3485 TCTTGACGAAAATTTGCAT 3467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355842493590185