Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq121238 136 4e-27 seq37844 109 5e-19 seq55701 95.1 1e-14 seq54613 93.3 4e-14 seq54614 86.0 6e-12 >seq121238 Length=2101 Score = 136 bits (150), Expect = 4e-27 Identities = 288/425 (68%), Gaps = 10/425 (2%) Strand=Plus/Minus Query 22391 CATTTGCTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGACGCCCTGAAA 22450 ||| | |||||||| ||| | ||||| |||||||| ||||| ||||| ||| | | ||| Sbjct 1285 CATCTACTCTACGGCTTCATTCCAATTTGCGGCGGTGACGGTATCAATGACAGCTTAAAA 1226 Query 22451 ACGGTGCCGGGAAGCTTCGAGGCGTTGCAACGGTCGTGCGTCAATAGAGCCGATTTCAAG 22510 | | || || ||| | || || || || || || | | | |||||||| Sbjct 1225 GAGATCGAAGGCAGTTTCCAAGCATTACAGCGATCTTGTAGCGGCCGCGAGGATTTCAAA 1166 Query 22511 GTGACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTGTCGTCGTGG 22570 || | || || ||||| ||||| || |||||||||| |||| ||| |||| || ||| Sbjct 1165 GTCTCAATCCATGATCCATGGGCAGCATTACAAAAACCACAAAGAGGATTGTCTTCATGG 1106 Query 22571 AACGAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCGAATCCTCAT 22630 || ||||| ||||||||||| ||||| ||||||||| | | ||| ||| || || Sbjct 1105 AATGAACCCTACAAAGGCAATTTTGGCCAATTGATGTCTCTCAAACAAGCCCGACCCGAT 1046 Query 22631 CTCAAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTATCATATGC-A 22689 | || | | | || || || || |||||| | | ||||| || | || | | | Sbjct 1045 TTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCTGATCCATTCT-TCTTTTTCGT 987 Query 22690 CGACAAGAACGTGAGACAA----ATTTTCATCGATTCGGTGGAAGAGTATTTGATCACGT 22745 |||| || | ||| || |||| | | || || | |||| | | | || | Sbjct 986 TGACA--AATCTAAGAGAACACGATTT--GTGCAGTCAGTCAAGGAGTTTCTTTTAACAT 931 Query 22746 GGAAGTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGCGAATC 22805 |||| ||||| || || || ||||| ||||||||||| || || ||||| || || || | Sbjct 930 GGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAAGGCGCTAACC 871 Query 22806 CTAAC 22810 || || Sbjct 870 CTGAC 866 >seq37844 Length=1442 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| ||||| || | ||||||||||| ||||||||||| ||| | | || ||| | Sbjct 272 CGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGACCA 213 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| | || | || || || || ||||| || ||||| ||| Sbjct 212 TCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTG 153 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || || | | ||| | ||||||| | || ||||| | || | Sbjct 152 TCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAACTTCTAATGTGATT 93 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || || || |||||||| |||||||| Sbjct 92 GTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 58 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| ||||| | |||||||||||||| || ||||| || | Sbjct 512 CCACCACGAAGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGAC 453 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| ||||| || || || ||| |||| | ||||| ||||| || || Sbjct 452 AGGGTGCGGCCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGA 393 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| ||| || ||| | | ||| | ||||| | ||| || Sbjct 392 ATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACC 333 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || || || || |||||||||||||| Sbjct 332 TCTAAAGTAATGGTTTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq55701 Length=1651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| ||||||||||| || | ||||| ||| || ||||| |||||| Sbjct 100 GTAGATTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCTTCAAGCTGCTTTCCA 159 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | || | || |||||||| || || |||||||| || ||| |||||| ||| Sbjct 160 GCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTA 219 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | || || | | || ||||| | || | || ||||| || || || Sbjct 220 ACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTCTTGCCTGTAAGTGTC 279 Query 127097 TTTACAAAAATCTGCAT 127113 ||||||||||| ||||| Sbjct 280 TTTACAAAAATTTGCAT 296 >seq54613 Length=3623 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | |||||||| ||||| || ||||| || Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2610 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| |||| || |||||||| | ||||| || || ||||| ||||| Sbjct 2609 AGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 2550 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| ||| ||| |||| | | ||| | || || | | || || Sbjct 2549 ATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAAC 2491 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || || || ||||| |||||||||||||| Sbjct 2490 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT 2443 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 126920 GACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCG 126979 || ||||||||||||||||| || | |||||| ||| |||| || || ||||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 126980 TAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGT 127039 |||| | ||||||||||| || || |||||||| ||||| |||||| || | Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 127040 TGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099 | ||| | || || | || ||||| | || | ||||| || || || || ||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 127100 ACAAAAATCTGCAT 127113 ||||| |||||||| Sbjct 2900 ACAAAGATCTGCAT 2887 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| ||| | || || |||||||||||||| || || | |||||| | Sbjct 3560 CGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGATAGTGTGCGACCA 3501 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || |||| || || ||||| |||| | ||||||||||| || || || ||||| ||| Sbjct 3500 TCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATACCCTCTTTG 3441 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || |||||| || | | ||| | || || | || ||||| | || | Sbjct 3440 TCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATT 3381 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || || || |||||||| |||||||| Sbjct 3380 GTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 >seq54614 Length=296 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| ||||| || | ||||||||||| ||||||||||| ||| | | ||| ||| | Sbjct 118 CGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGCGTACGACCA 177 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| | || | || || || || ||||| || ||||| ||| Sbjct 178 TCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTG 237 Query 127019 TC 127020 || Sbjct 238 TC 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473386360873840