Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq121238 228 7e-55 seq7548 187 2e-42 seq54613 120 3e-22 seq2515 114 1e-20 seq55701 102 7e-17 >seq121238 Length=2101 Score = 228 bits (252), Expect = 7e-55 Identities = 596/899 (66%), Gaps = 29/899 (3%) Strand=Plus/Plus Query 50155 TGTAATCAACTACGCCGTCTTCCCAAGTGCCTGCCGCCGGGCCGGTGGCGATTCCCGTAA 50214 |||| || || || ||||||| |||||| || | || || || ||| | || || | Sbjct 403 TGTAGTCGACCACTCCGTCTTGCCAAGTACCCTTGACAGGTCCAGTAGCGTTGCCTGTGA 462 Query 50215 ACGGATTGTCGTCTTTGTAGCCGGTCACGCCGCGCCAACCCCTGCCGTACATGGCCACGC 50274 | ||||||| ||||| ||| | || || |||||| | || |||||||| || | Sbjct 463 AGGGATTGTTGTCTTCGTAATCATGAACTCCAGTCCAACCACGACCATACATGGCAACAC 522 Query 50275 CTACGATTATTTTGCTCGGCTGCACGTTTTGATCGAG-AAGAACGTTTACCGCAAAATCG 50333 |||| | || || | || | ||| || | | ||| | ||||| | || || Sbjct 523 CTACTACAATCTTCTTAGGATTCACTCCCTGTGCTAACAAGTAT-TTTACTCCGAAGTCA 581 Query 50334 GTCGTGTACTTTTCGTCGGTGTTCCATGCGGGCGCATACAAAGGCGTCTGATGTCCCAAA 50393 | ||||| |||| | || ||||||||| ||||| ||||| || || |||||||| | | Sbjct 582 GAAGTGTAAGTTTCCTTGGGGTTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGA 641 Query 50394 TCGACGGTGGACCAAGCGCCTTTAAAATCGTAACTCATTAAAAATATTTTATCTAAATAA 50453 | | ||||| || ||||| || ||||||||||| || || || | ||| | |||| Sbjct 642 GTATCATTTGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAA 701 Query 50454 TTTTGAGCGTCGCCGTAATTGACAAGGGCGATTTTATCGTAACCTGCGCTAACGGCGCTC 50513 |||||||| | || ||| | |||| ||||||||| | || ||||||| || Sbjct 702 TTTTGAGCCTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGAA 761 Query 50514 GTCAATTCGAATTCGCGGCCGGTGACGCGTTGA-AGATCGTCCAGCATGTCGCGCAGATC 50572 || |||||| ||| | | | | ||| || || || ||||| || || | || Sbjct 762 GTTAATTCGTATT-TCTTACCATTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTC 820 Query 50573 GCGAAGCAGCACAACGTACGTGA----GTCCGTCTTTGTGAGGATCGCCGACTGCGGGAT 50628 | || ||| ||| | | || ||| | ||| || | | || | Sbjct 821 TTTCATCA----AACTTACATAACAATCACCATCT---TCTGGACTCCCAAGGTCAGGGT 873 Query 50629 TGGCGCCGTTGCCGCCGGGAAACTCCCAATCGATGTCGACGCCGTCGAAAAACTTCCAAG 50688 | ||||| ||||| || || |||||||||||||| || || || ||||| || ||||| | Sbjct 874 TAGCGCCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATG 933 Query 50689 TCAGCAGAAACTCGCGTACCGATTCCACAAAAACGGCTCGTTTT---TCCGCGTCGTGCA 50745 | | |||||||| || || | |||||| |||| || | | | || | Sbjct 934 TTAAAAGAAACTCCTTGACTGACTGCACAAA------TCGTGTTCTCTTAGATTTGTCAA 987 Query 50746 TGTGA---AAAAATGGATCGGACAACGTCCATCCGCCTATAGACGGTAACACCTTGAGGT 50802 | | || |||||||| | | |||||| || || ||||| || | | ||| | | Sbjct 988 CGAAAAAGAAGAATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAAT 1047 Query 50803 GCGGGT-TGGCtttttttATCGCCATCAGTTGACCGAAATTTCCTTTGTACGGTTCGTTC 50861 ||||| ||||| ||| | | ||||| ||| || ||||| |||||||| ||||| ||| Sbjct 1048 -CGGGTCGGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTC 1106 Query 50862 CAAGCCGAGACGCCCTTTTGTGGTTTCTGTACCGCAGCCCACGGGTCGTGAATGGACACT 50921 || | || | || |||||||||| |||| || ||||| || || || || || ||| Sbjct 1107 CATGAAGACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACT 1166 Query 50922 TTAAAATCGGCTCGGCCGGCGCACGAACGCTGCAGCGCCTCGAAACTGCCCGTGACGGTT 50981 || ||||| | |||||| || || ||||| | || | ||||||||| || | Sbjct 1167 TTGAAATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCGATCTCT 1226 Query 50982 TTCAACGCGTCGTTGACGCCTTCGCCGCCGCAAATCGGCACGAAACCGTACAGCAAATG 51040 || || ||| |||| || || ||||||||||| || | ||| ||||| || | ||| Sbjct 1227 TTTAAGCTGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATG 1285 >seq7548 Length=2633 Score = 187 bits (206), Expect = 2e-42 Identities = 655/1019 (64%), Gaps = 8/1019 (1%) Strand=Plus/Plus Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGG 123372 |||| || ||||| | || | | || || ||| |||||| |||| || || Sbjct 892 TAGAGCCTTGGCATGCAGACATATTTGAGTTCTTAGATTTAAGGAAGAACACAGGTAAGG 951 Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432 |||||| || ||| | || |||| || ||||||||| |||| ||| |||||||| | Sbjct 952 AAGAAATGAGAGCTAGAGAACTGTTTTATGCTTTATGGATACCAGATCTGTTTATGAAAA 1011 Query 123433 GCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCG 123492 | ||| || | || | || ||| || |||||||| || ||||| || | | Sbjct 1012 GAGTAGAAAAGGATGAAGTTTGGAGTCTAATGTGTCCTCATGACTGTCCTGGTCTCGCTG 1071 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGG 123552 || || || | ||||||| || | || || |||| || ||| |||| Sbjct 1072 ACTGCTATGGAGAGGAGTTTGAAGAACTATATGCCAAATATGAAAAAGAA---AAACGAT 1128 Query 123553 TTAGT---CAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAA 123609 ||| || || || | || || | || | ||||| ||| | ||||| || | Sbjct 1129 TTATAAAACAAGTCAGAGCTCAAGAGTTATGGAAGTCAATTATAGAAGCCCAAGTGGAGA 1188 Query 123610 CCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACT 123669 | || || || |||||| | || || || || || |||||||| | ||||| | || Sbjct 1189 CTGGTACACCATACATGTTGTATAAGGATGCTTGTAACAGGAAGAGTAATCAAAAGAATC 1248 Query 123670 TGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATC 123729 | || || || |||||||| ||||||||| | || || | |||||| | ||| Sbjct 1249 TTGGCACTATTAAATGTAGCAATCTTTGCACTGAGGTTGTGCAATACACTTCAGAAGATG 1308 Query 123730 AAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACGGCGCTT 123789 ||||||| || || ||| | ||||| || | || | || ||| | | Sbjct 1309 AAGTGGCAGTATGCAATCTTGCTTCCATAGCACTTAACATGTTTGTTGAACATAAGCAAT 1368 Query 123790 TTAATTTCCAAACGCTCAAACGCATAACAAAAACTGT-AGTAAAGAATTTGAACAAAATT 123848 ||||||| ||| | ||| || ||||||| ||| | | || ||||| |||||| | Sbjct 1369 TTAATTTTAAAAAATTAAAAGAAATCACAAAAATTGTCACTCAA-AATTTAAACAAAGTC 1427 Query 123849 ATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCG 123908 || |||||||| ||||||||| | ||||| || ||| |||| ||| | || Sbjct 1428 ATTGATGTTAACTTTTATCCTGTCCCTGAAGCAAAAACTTCAAATATGAAGCACCGGCCT 1487 Query 123909 GTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAA 123968 |||| | || |||| || |||| || | ||||| || || | || || |||||| Sbjct 1488 ATCGGTATTGGTGTTCAGGGAATGGCAGATACATTTGTGTTGATGAGAATACCTTACGAA 1547 Query 123969 AGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTG 124028 || || |||||| | |||||| |||||| ||||| |||||||| || || || Sbjct 1548 AGTGAGAAAGCAATACTCCTTAATCAACAAATATTTGAAACTATTTATTATGGTGCATTA 1607 Query 124029 GAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCG 124088 || || || || ||| | || ||| | || || ||| | ||| | || || || Sbjct 1608 GAAGCTAGTTGTGAATTAGCAGAAAAAGAAGGTGCATACAGTACTTATGAAGGGAGTCCA 1667 Query 124089 GCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGAC 124148 | ||||| |||||| | || || || |||||| | || || || | |||||||| Sbjct 1668 GTGAGCCAAGGTATCCTACAATATGATATGTGGGACAAAACTCCTACGGAACTGTGGGAC 1727 Query 124149 TGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCG 124208 ||| | | ||| || ||| | | || |||||||| || || || ||| | || Sbjct 1728 TGGGCTGCCCTCAAAGAAAAAATAGCAAAACATGGTTTGCGCAATTCTCTATTGTTAGCT 1787 Query 124209 TACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTC 124268 ||||| || || | || || |||||| | || |||| || || || || || || Sbjct 1788 CCTATGCCAACCGCCTCTACAGCACAAATTCTTGGTAACACTGAGTCTTTTGAACCCTTT 1847 Query 124269 ACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCA 124327 || || | ||| || |||| ||| | || || |||| || | |||||||| Sbjct 1848 ACATCAAACATTTACCAAAGAAGAGTCTTATCTGGAGAATTTCCTGTAGTGAATCATCA 1906 >seq54613 Length=3623 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || |||||||| || || || ||||||||||| || || || Sbjct 2672 ATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 2613 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || || | | ||| || ||||| ||||| || | ||||| ||||| || || | Sbjct 2612 --GAAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTG 2555 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| || ||||||||||| ||| | ||| | || ||||||| | Sbjct 2554 GAGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTT 2495 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||||| ||||| || || || ||||| |||||||| ||||| Sbjct 2494 CAACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT 2443 >seq2515 Length=4501 Score = 114 bits (126), Expect = 1e-20 Identities = 177/250 (71%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | || ||| ||||||| || ||||||||||| || |||||||| | Sbjct 3693 CCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCA--G 3636 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| || | || || || || | ||||||||||||||||| || | Sbjct 3635 ACAATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTG 3576 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 |||| ||||| |||||||| || || ||| | ||| | || || || | || | Sbjct 3575 GAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCA 3516 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC--C 45349 | || || |||| ||||| || || || || || || ||||||||||| | | ||| Sbjct 3515 CCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGGGACTGT 3456 Query 45350 AATTTAATAA 45359 ||| |||||| Sbjct 3455 AATATAATAA 3446 >seq55701 Length=1651 Score = 102 bits (112), Expect = 7e-17 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || | || ||||| |||| ||||||||||| || |||||||| | Sbjct 295 ATTCCACCCCTAAGGCGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGT-- 352 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||||| | | | ||| || | ||| ||||| ||| | || | || ||| || || | Sbjct 353 CTGACAATGTACGCCCATCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTG 412 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | |||||||| ||||| || ||||| ||| || | || | || | || || |||| Sbjct 413 GAGGAATGCCCTCTTTGTCCTGAATCTTTGCCTTTA-CGTTCTCGATTGTATCAGAAGCT 471 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || | ||||| ||||||| |||||||| || |||||||| Sbjct 472 TCCACTTCCAATGTGATGGTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCAT 524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| || | || | || |||||| || || |||||||| |||||||| |||||| Sbjct 151 TGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATT 210 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || || | ||| | || || |||| || ||||| | ||||| || ||||| Sbjct 211 TTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTCTTGCCT 270 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||||||||||||||| Sbjct 271 GTAAGTGTCTTTACAAAAATTTGCAT 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449993249120360