Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq54613 111 4e-19 seq55701 105 2e-17 seq37844 105 2e-17 seq110694 89.7 1e-12 >seq54613 Length=3623 Score = 111 bits (122), Expect = 4e-19 Identities = 164/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || || || || || ||||||||||||| ||||||||||| | || Sbjct 2664 TCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGTGT 2605 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| | |||||||| || || || | ||| || || || ||| ||| || Sbjct 2604 ACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCC 2545 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || ||||| ||| || || || ||| | || || | | ||| || |||| Sbjct 2544 TTCCTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACTTCCA 2486 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 | || || || |||||||| || ||||| |||||||| || |||||| Sbjct 2485 AAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTG---CATTTT 2440 Score = 102 bits (112), Expect = 2e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||||| ||||||||| | || || | |||||| Sbjct 3329 AGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGATAAGGTACGGCCATCT 3270 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||| || |||||||| |||||||| || || ||| ||| || || || Sbjct 3269 TCCAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGAGGAATACCCTCCTTGTCT 3210 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 || ||||| ||| || ||| | |||||| | || ||||| |||| Sbjct 3209 TGGATCTTAGCCTTAACATTTTCAATGGTGTCAGATGCCTCTACCTCCA 3161 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||||| ||||||||| | || || | |||||| Sbjct 2870 AGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGATAAGGTACGCCCATCT 2811 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTG 199509 ||||||||||| || || ||||| |||||||| Sbjct 2810 TCCAGCTGCTTGCCAGCAAAGATAAGACGCTG 2779 >seq55701 Length=1651 Score = 105 bits (116), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||| | ||| || | ||| | ||| || ||||| || | || ||||| | ||| || | Sbjct 306 AAGGCGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACG 365 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||| || |||||||||||||| || || | || || || ||| ||| || || Sbjct 366 CCCATCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTC 425 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 | |||||||||||| ||| ||| |||| || || | | ||| || ||||| || Sbjct 426 TTTGTCCTGAATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGT 485 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || | ||||| || || ||||| Sbjct 486 GATGGTTTTCCCGGTTAAGGTTTTTACGAAGATTTG 521 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| | ||| || || || || | |||||||||| | ||| | ||||||| Sbjct 85 AGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCT 144 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| || || || || | ||||| || || ||| || ||| ||| Sbjct 145 TCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCC 204 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||| || ||| | || || | | ||| || ||||| || || ||| Sbjct 205 TGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTC 264 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||||||||| Sbjct 265 TTGCCTGTAAGTGTCTTTACAAAAATTTG 293 >seq37844 Length=1442 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || ||||| ||||| ||||||| ||||||||||| || || Sbjct 506 CGAAGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTG 447 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| || |||||||| |||||||| || || || ||| || Sbjct 446 CGGCCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACCC 387 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || ||| | ||||| | || || || || || Sbjct 386 TCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAAA 327 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || |||||||| || Sbjct 326 GTAATGGTTTTCCCAGTAAGTGTCTTAACAAAAATCTG 289 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || || | ||| | ||| ||||| || || | |||||||| || | ||| Sbjct 279 TCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGAGT 220 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| ||||||||||| || ||||| || ||||| || ||||| ||| ||| || Sbjct 219 ACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGAATACC 160 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| || || ||| | ||||| | | ||| || || || Sbjct 159 CTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAACTTCTAA 100 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || ||||| || || Sbjct 99 TGTGATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTG 61 >seq110694 Length=236 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| | ||| || ||||| |||| || ||||||| ||| || | |||||||| || || Sbjct 78 GTGCAAAGTTGATTCCTTCTGGATATTATAGTCAGACAATGTGCGGCCATCTTCGAGTTG 137 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||| || || || || | ||| ||||| ||| ||| |||||| ||||||||||| Sbjct 138 CTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATCTT 197 Query 199546 TTGCTTCACGGATTCGA 199562 | ||| || ||||| Sbjct 198 TGCCTTAACATTTTCGA 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173548156029647