Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq121238 239 3e-58 seq54613 114 9e-21 seq55701 98.7 7e-16 seq37844 86.0 4e-12 >seq121238 Length=2101 Score = 239 bits (264), Expect = 3e-58 Identities = 800/1222 (65%), Gaps = 46/1222 (4%) Strand=Plus/Plus Query 5817 TTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCAC 5876 ||||| | ||| ||||||| ||||| | ||||||||||| || ||||| |||||||| Sbjct 168 TTGCCGAGACCCATGTTCATGGCATTCAGTAGATCACCGTTATCGGCGTCGATTTCCCAA 227 Query 5877 GCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGA 5936 ||||| | ||| || | || || | |||||||||||| || | | || ||| | Sbjct 228 GCAAAGAGACCGCCTAGCTTGTTATTTCTTACATACTTACCCTTCTCAATAACTGATCTA 287 Query 5937 TCGTTGTCGTACGTAACTAAATCATTATT--ATCGT----AGACGTACGGAGATTGTGCA 5990 | || || || || || | || | | || || ||||||| || | ||| || Sbjct 288 GCATTATCATAGGTTACAAGGTCTCCAGTTGATGGTCTGAAGACGTAAGGTGCTTGGGCG 347 Query 5991 ATGTTATCATA---GAATTGTACACTTTCGTCGTAC--CT--ATTTACAATATCTTTATA 6043 | || || || ||| | ||||| | | | | || ||| |||| || | || Sbjct 348 ACATTGTCGTAATGGAACTCC-CACTTGCCTTGAGCAACTTCATTGGCAATTTCCCTGTA 406 Query 6044 ATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGG 6103 |||| || ||| || ||| ||||| || || || | |||| | ||||| || || Sbjct 407 GTCGACCACTCCGTCTTGCCAAGTACCCTTGACAGGTCCAGTAGCGTTGCCTGTGAAGGG 466 Query 6104 ATTATTGTTTTCG-ACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTA 6162 ||| |||| |||| | || ||| || || |||| || || |||||||| || ||||||| Sbjct 467 ATTGTTGTCTTCGTAATC-ATGAACTCCAGTCCAACCACGACCATACATGGCAACACCTA 525 Query 6163 CTACTAATTTAGTCGAATCGACATTTTGATTTAACAA-TCTGTTAATAGCAAAATGGGTT 6221 |||| | || | | || || || |||||| | | ||| | | || | | Sbjct 526 CTACAATCTTCTTAGGATTCACTCCCTGTGCTAACAAGTATTTTACTC-CGAAGTCAGAA 584 Query 6222 GTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTT 6281 |||||| |||| || || ||| | ||| ||||| | ||||||||| || | | | Sbjct 585 GTGTAAGTTTCCTTGGGGTTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTA 644 Query 6282 TCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGT 6341 || | ||||| || ||||| || ||||| |||| | || |||| ||| | ||| | Sbjct 645 TCATTTGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTT 704 Query 6342 TGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTT 6401 || || | | || || ||||| | |||||| || | || || | ||||| |||| Sbjct 705 TGAGCCTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGAAGTT 764 Query 6402 AGTTGCAATCGTTTACCTCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTTT 6461 | || || ||||| |||| | | || | |||||| || ||||| || || Sbjct 765 AATTCGTATTTCTTACCATTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTC 824 Query 6462 AAAAGTATTGTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACCT 6521 | | || ||| | | ||| ||| | | || || ||||| || ||| Sbjct 825 ATCAAACTTACATAACAATCACCATCTTCTGGAC---TCCCAAGGTCAGGGTTAGCGCCT 881 Query 6522 TTACCGCCCGGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAAA 6581 || || || || ||||||||||| || || || || ||||| |||||||| ||| | | Sbjct 882 TTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAAAAGA 941 Query 6582 AATTCGCGCACACTATCAACAAA-CGTATT----TCGTTTT-TCGACGTCGTTTAACTGG 6635 || || || | ||||| ||| || | | ||| || ||| || | Sbjct 942 AACTCCTTGACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACG------AAAAAG 995 Query 6636 TAAAACGGATCGCTAAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTG 6695 | || ||||| ||||||||| || || || || || | || | ||||| || | Sbjct 996 AAGAATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAATCGGG--TC 1053 Query 6696 TGGC--GCTTGATCGCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCT 6753 ||| | |||| | ||| || || ||||| || |||||||| ||||| || | | Sbjct 1054 GGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCATGAA- 1112 Query 6754 CGACA--CCTTTTTGTGGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAA 6811 |||| ||| ||||||||||||| | ||| ||||| |||||| || | |||||||| Sbjct 1113 -GACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACTTTGAA 1171 Query 6812 ATCTTTTCGGCCGGCGCACGATTTTTGCAACGCCTC-AAACGAACTGGGTATTTGTTGTT 6870 ||| | |||||| || ||| || || || | |||| || | || | || | Sbjct 1172 ATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCG-ATCTCTT--T 1228 Query 6871 TAAGCGCATCGTTTACACCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTG 6930 ||||| || || | ||| || ||||| |||||||| || || ||||| | | ||| | Sbjct 1229 TAAGCTG-TCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATGAG 1287 Query 6931 TAAGATTAGGAATGGGAATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCA 6990 |||||||||| || || || || | || ||| ||| |||||||||||||| | Sbjct 1288 TAAGATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATAAACACCCCATTCTA 1347 Query 6991 CAAAGTAAGCGCCCACAACATT 7012 | || ||||| |||||||| || Sbjct 1348 CGAAATAAGCACCCACAACTTT 1369 >seq54613 Length=3623 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||||| ||||||||||| ||| | ||| ||||||||| |||||||| || | Sbjct 3573 GCCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGA 3514 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | ||| |||| || ||||| || || |||| || | |||||||||||| | || Sbjct 3513 TAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 3454 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || |||||||| ||||| ||| | | | | ||| || | | ||| || Sbjct 3453 GATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAAC 3394 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| |||||||| || || | || ||||| ||||||||||| Sbjct 3393 TTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||| ||||||||| | ||| | || || ||||| || || || || | Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAG-- 2612 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| | || |||| || ||||| || || ||||||| ||||| || ||||| | | Sbjct 2611 AAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAG 2552 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | |||||| ||||| ||||| ||| | | | | || || | ||| | Sbjct 2551 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAA 2492 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||||||||| ||||||||||| | ||||| || || |||||||| Sbjct 2491 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT 2443 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| ||||| || || | | ||| |||| || ||||| || || |||| Sbjct 3078 TTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAA 3019 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || | |||||||||||| | || | ||| |||||||| ||||| ||| | | Sbjct 3018 GATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATT 2959 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | ||| || | | ||| || || ||||| |||||||| || || | || ||||| Sbjct 2958 TTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTTAC 2899 Query 39708 GAAGATCTGCAT 39719 ||||||||||| Sbjct 2898 AAAGATCTGCAT 2887 >seq55701 Length=1651 Score = 98.7 bits (108), Expect = 7e-16 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| || || |||||||| ||| || || |||||||| || | ||| || || Sbjct 310 CGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACGCCCA 369 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||| || ||| | ||||||| | || ||||| | || | ||| |||||| Sbjct 370 TCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTCTTTG 429 Query 39625 TCGCATATTTTTTG--TTTAATCGT-CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTA 39681 || | | | |||| |||| ||| | | | ||| || | |||||| ||||| || Sbjct 430 TC-CTGAATCTTTGCCTTTA--CGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTG 486 Query 39682 ATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| || ||||| |||||||||||||| |||||| Sbjct 487 ATGGTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCATG 525 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| || ||| ||||||| |||||||| |||||| || ||||| || | Sbjct 66 CATC-CCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGT 124 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | | | | |||| |||| || | || || || ||||||| | | |||||||| | Sbjct 125 CAGATAGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTG 184 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | ||| ||||| || ||||| |||| | | | ||| || | || Sbjct 185 GGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTT 244 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||||||||| || || || || | || ||||| || || ||||| Sbjct 245 CCACTTCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACAAAAATTTGCAT 296 >seq37844 Length=1442 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||||| |||||| |||||||| ||||| || ||||| || ||||| Sbjct 284 CCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCG 225 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || |||| |||| || || || | ||||||| ||| || || || | || Sbjct 224 AGAGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGA 165 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || || ||||| | | | ||||| | ||| || Sbjct 164 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAACT 105 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || |||||||| || || | || ||||| ||||||||||| Sbjct 104 TCTAATGTGATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345863546641853