Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq37844 167 5e-36 seq55701 158 3e-33 seq54614 143 6e-29 seq2515 138 3e-27 seq54613 132 1e-25 seq110694 109 1e-18 >seq37844 Length=1442 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | ||| || | ||| | ||| |||||||| ||||||||||| ||||| ||||| Sbjct 279 TCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGAGT 220 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || ||||||||||| ||||| || || |||||||||||||||||||| || Sbjct 219 ACGACCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGAATACC 160 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| || || || || || ||||| ||||||||| ||| ||||| | Sbjct 159 CTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAACTTCTAA 100 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || ||||| | || ||||| || | ||||| Sbjct 99 TGTGATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 58 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| ||||||||||| || ||||| || | || || | |||||||| || ||| Sbjct 488 TGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTAGTTGC 429 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || |||||||||||||| || ||||| ||||| ||||| || || |||||||| || || Sbjct 428 TTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTA 369 Query 195058 TGCTTGACGTTCTCAATGGTGTC 195080 ||| || || ||||| ||||| Sbjct 368 GCCTTAACATTTTCAATAGTGTC 346 >seq55701 Length=1651 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||| || ||||| ||||||||||| || | ||||| | |||||||| Sbjct 88 ACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCTTCA 147 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || ||||||| ||| || ||||| |||||||| ||||| || ||| Sbjct 148 AGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGA 207 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || ||||| || || ||| ||||||||| | |||| ||||| Sbjct 208 ATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTCTTG 267 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | || ||||| || | ||||||| Sbjct 268 CCTGTAAGTGTCTTTACAAAAATTTGCATT 297 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||| || || || |||||||| || || | | || | ||||||||| || || Sbjct 321 GTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACGCCCATCTTCTAGTTG 380 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || |||| |||||| |||||||||||||| |||||||| ||||| || Sbjct 381 CTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTCTTTGTCCTGAATCTT 440 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| |||||||| || || || ||| ||||||||| | || | || || || || Sbjct 441 TGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCGGT 500 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| | |||||| Sbjct 501 TAAGGTTTTTACGAAGATTTGCAT 524 >seq54614 Length=296 Score = 143 bits (158), Expect = 6e-29 Identities = 138/177 (78%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | ||| || | ||| | ||| |||||||| ||||||||||| ||||| || || Sbjct 111 TCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGCGT 170 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || ||||||||||| || || || || |||||||||||||||||||| || Sbjct 171 ACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACC 230 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTC 195095 ||||||||||| || || || || || ||||| ||||| ||| ||| ||||| Sbjct 231 CTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAAGGTTCAACTTC 287 >seq2515 Length=4501 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || ||||| || | ||||| || |||||||| || ||||| | | || | Sbjct 3684 AGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGACAATGTACGT 3625 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| || ||||| | |||||| |||||||| ||||| ||||| Sbjct 3624 CCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCTTCC 3565 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| || || || || || ||||| || || || |||||| ||||||||| Sbjct 3564 TTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCACCTCAAGGGTA 3505 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | || || ||||| | ||||||| Sbjct 3504 ATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 3466 >seq54613 Length=3623 Score = 132 bits (146), Expect = 1e-25 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || ||||| ||||| || ||||| || | ||| || | |||||||| Sbjct 2651 ACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGTGTACGGCCATCTTCT 2592 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || || || || | |||||||| ||||||||||||||||| ||||||||| Sbjct 2591 AATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 2532 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || || ||||| || || ||| ||| ||||| | |||| || || Sbjct 2531 ATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACTTCCAAAGTAATGGTTTTA 2472 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || | ||||| || || | ||||||| Sbjct 2471 CCCGTAAGTGTTTTGACAAAAATCTGCATTT 2441 Score = 125 bits (138), Expect = 2e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| ||||| || ||||| || | | || | |||||||| || || Sbjct 3321 GTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGATAAGGTACGGCCATCTTCCAGTTG 3262 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| |||||||||||||| || ||||| ||||||||||| || || |||||||| || || Sbjct 3261 CTTGCCTGCGAAGATAAGACGCTGTTGATCTGGAGGAATACCCTCCTTGTCTTGGATCTT 3202 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||| || || ||||||||||| || Sbjct 3201 AGCCTTAACATTTTCAATGGTGTCAGA 3175 Score = 116 bits (128), Expect = 8e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| ||||| |||||||||||||| || || | || || | |||||||| Sbjct 3554 ACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGATAGTGTGCGACCATCTTCT 3495 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| || |||||||| || || || || || || || || ||||||||||| Sbjct 3494 AATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATACCCTCTTTGTCTTGG 3435 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || || ||||| || || || ||| ||||| | || | || || Sbjct 3434 ATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTC 3375 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || ||||| || | ||||| Sbjct 3374 CCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 194947 GACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCG 195006 || ||||||||||||||||| || | || || | |||||||| | |||||||| || Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACG 195066 |||||||| || || || || || || ||||| ||||||||||| ||||| || || Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 195067 TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTT 195126 || ||||| || || || ||| ||||| | || | || || || || | || ||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 195127 ACGAACACTTGCAT 195140 || || | ||||| Sbjct 2900 ACAAAGATCTGCAT 2887 >seq110694 Length=236 Score = 109 bits (120), Expect = 1e-18 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| | ||| || || || || ||||| || || | | || | ||||| Sbjct 69 CAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCAGACAATGTGCGGCCATC 128 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||| ||||| || || || || || | ||||||||||||||||| ||||||||||| Sbjct 129 TTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGAGGAATACCTTCTTTGTC 188 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTC 195095 ||||| ||| ||| || || || || || || ||| ||||||||| Sbjct 189 CTGAATCTTTGCCTTAACATTTTCGATTGTATCAGAAGCTTCCACTTC 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1104424658797347