Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq121238 163 2e-35 seq37844 98.7 6e-16 seq2515 96.9 2e-15 seq54613 87.8 1e-12 seq55701 86.0 4e-12 >seq121238 Length=2101 Score = 163 bits (180), Expect = 2e-35 Identities = 586/903 (65%), Gaps = 35/903 (4%) Strand=Plus/Plus Query 5654 TCGTGCACTCCGGACCACCCACGACCGTACATGGCTACACCCACAATTAGCTTCTTCG-A 5712 || || ||||| | ||| |||||||| |||||||| ||||| || | | |||||| | | Sbjct 483 TCATGAACTCCAGTCCAACCACGACCATACATGGCAACACCTACTACAATCTTCTTAGGA 542 Query 5713 TTCGACGCTCTGATTTAACAGACGCTTGATTGAAAAATCTGTCGTGTATGTCTCGCCTGG 5772 ||| || | ||| ||||| || | | || || | ||||| || || || Sbjct 543 TTC-ACTCCCTGTGCTAACAAGTATTTTACTCCGAAGTCAGAAGTGTAAGTTTCCTTGGG 601 Query 5773 GTTCCACGATGGAGCGTACAGAGGTGTCTGGTGTCCCAGA---TCCGTTAACGACCAGGC 5829 |||||| | || ||||||| ||||| || ||||| ||| || || |||||||| Sbjct 602 GTTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCATTT---GACCAGGC 658 Query 5830 ACCCTTGTAGTCGTACGTCATAACAAAGATGTGATCAAGATACCTTTGTGCGCTGGCGTA 5889 ||| ||| ||||||| |||| | || || ||||| | ||| |||| || || ||| Sbjct 659 ACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGCTGTA 718 Query 5890 GTCGACAACGTCGATCTTGTCATGTCCCGCGCCGATAGCACTTGTCAATTGTAACCGTTT 5949 ||| ||||| | ||| || || || |||| |||||| || |||| | || Sbjct 719 GTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGAAGTTAATTCGTATTTCTT 778 Query 5950 ACCCCGCTTCTCGCCCAACTCGTCAAGCATCACGCGAAGTTCCCGCAACAAAAGAGTGTA 6009 ||| ||| | | || || |||||| | || | ||| || |||| || Sbjct 779 ACCATTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCAAA----CTTA 834 Query 6010 CGTATTGCGGTCCA-CCTCGGCATTACCCAACACAGGATTAGCACCCTTTCCACCCGGAA 6068 | || ||| | || | | | || | |||| ||||| || || ||||| || | Sbjct 835 CATAACAATCACCATCTTCTGGACTCCCAAGGTCAGGGTTAGCGCCTTTGCCACCAGGGA 894 Query 6069 ACTCCCAGTCAATGTCCACTCCGTCAAAGAACTTCCATGTCTCCAGAAACTCGCGGACAC 6128 ||||||| || || || || || || ||||| |||||||| |||||||| ||| Sbjct 895 ACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAAAAGAAACTCCTTGAC-- 952 Query 6129 TTGTGAC-GAACACCT----TACGTTTGGA---GTCATCGTTCATAAAATAAAACGGATC 6180 |||| | ||| | | | || || |||| || | ||| | || ||||| Sbjct 953 ---TGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACG---AAAAAGAAGAATGGATC 1006 Query 6181 GCTCAACGTCCACCCCCCTATGGATGGTAGGACTGTCAACGAAGGGTTGTG-ACGTTTGA 6239 | ||||||||| || || || || || | |||| |||| | | |||||| Sbjct 1007 AGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAA-ATCGGGTCGGGCTTGTTTGA 1065 Query 6240 TGGCCATCAGCTGGCCAAAGTTACCCTTGTACGCTTCGTTGTACGCCTCAACGCCTTTCT 6299 | ||||| |||||||| || || ||||| | ||| || | | | ||| | | Sbjct 1066 GAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCATGAAGACAATCCTCTTT 1125 Query 6300 GTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTCACCTTGAAGTCATCGCGACCAG 6359 |||||||||| || || ||||| || || || || ||||| || ||||| || Sbjct 1126 GTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACTTTGAAATCCTCGCGGCCGC 1185 Query 6360 CGCAGGATTTCTGTAGCGCCT--CAAAGGAATTGGGAATCTGCTTGAGGGCGTCGTTTAT 6417 || ||| ||||| || | || | || | |||| || | | ||| || || Sbjct 1186 TACAAGATCGCTGTAATGCTTGGAAACTGCCTTCG--ATCTCTTTTAAGCTGTCATTGAT 1243 Query 6418 GCCGTTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAGGTATTGG 6477 |||| ||| || |||||||||||||| ||||| || || || || ||||||||||| || Sbjct 1244 ACCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATGAGTAAGATTAGGTATAGG 1303 Query 6478 TACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAAATACGCACCGAC 6537 || || | || || | || ||| || ||||| || |||||||| ||||| || Sbjct 1304 TATACGATCCACAGGGAATTTCCTAGGATAAACACCCCATTCTACGAAATAAGCACCCAC 1363 Query 6538 GAC 6540 || Sbjct 1364 AAC 1366 >seq37844 Length=1442 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||| | || ||||||||||| || ||||| | || | || |||| Sbjct 270 CAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGACCATC 211 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || || || || ||||| ||||| |||||| | || | ||||| ||||| Sbjct 210 CTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTGTC 151 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||| || | | || | || | ||||| || | || || || Sbjct 150 TTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAACTTCTAATGTGATTGT 91 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || ||||| ||||| ||||||||||||||| Sbjct 90 TTTCCCTGTGAGTGTCTTTACAAAGATCTGCATA 57 >seq2515 Length=4501 Score = 96.9 bits (106), Expect = 2e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| || | |||| ||| || ||||||||||| || || | | ||| |||| || | Sbjct 3674 CAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAGACAATGTACGTCCATCTTCTA 3615 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 |||| || || ||||| || | ||||||||||||| | || | || ||||| || | Sbjct 3614 GCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGA 3555 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 |||| ||| || | | || | ||| ||| || || || | ||| |||||||| | Sbjct 3554 TCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCACCTCAAGGGTAATGGTTTTAC 3495 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || ||||| || || || ||||| Sbjct 3494 CCGTAAGGGTCTTGACGAAAATTTGCAT 3467 >seq54613 Length=3623 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | || |||| |||| ||| |||||| ||||| |||||||| || Sbjct 3572 CCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGAT 3513 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || | || || || ||||| || || || ||||| || | || Sbjct 3512 AGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 3453 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| || || ||| || | | || | ||| ||| ||||| Sbjct 3452 ATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACT 3393 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || ||||| || || || ||||| ||||||||||||||| Sbjct 3392 TCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCATA 3345 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| ||||| || ||||| || || | || |||| || | || || || ||||| Sbjct 3078 TTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAA 3019 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | ||||| ||||| || || ||| || Sbjct 3018 GATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATT 2959 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| ||| ||||| || | || || ||||| || ||||| ||||| || Sbjct 2958 TTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTTAC 2899 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 2898 AAAGATCTGCATA 2886 >seq55701 Length=1651 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| || ||||| || || | ||| |||| || ||||| ||||| ||||| Sbjct 105 TTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAA 164 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| |||||| ||| | || | ||||| || || ||| ||| || || Sbjct 165 AATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATT 224 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | ||| || || || || | || || || || || || || ||||| || Sbjct 225 TTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTAC 284 Query 34970 AAAGATCTGCAT 34981 ||| || ||||| Sbjct 285 AAAAATTTGCAT 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323226120694248