Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7548 470 2e-127 seq139650 118 1e-21 seq52122 104 3e-17 >seq7548 Length=2633 Score = 470 bits (520), Expect = 2e-127 Identities = 1176/1782 (66%), Gaps = 25/1782 (1%) Strand=Plus/Minus Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031 |||| || || || |||| || | ||| || | |||||| ||||| || ||||| | Sbjct 2250 CTTTGTCTACGGTGAACTGTATAGCATTTGCTGCCGGTTTTGTGCGTAAGTAGTACATTC 2191 Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091 | || ||||| || | |||| | | |||||| || |||| ||| ||| ||| Sbjct 2190 CTGTTTTTAAGCCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCCATAGTTAG 2131 Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151 | | | || ||| || |||| ||||||||| || || || || || ||||||||||| | Sbjct 2130 GCTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATGAAAGCTCCTCTATCAGCCG 2071 Query 47152 CCATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAAT 47209 |||| | || || ||| || ||||||||||| ||||| || | | | | || Sbjct 2070 CCATTTGTATGG--ACGTTTTCAATGAAATCTCCCATACGGTTTTGTACAAATCTCTTAT 2013 Query 47210 GTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataattttgttttt 47266 |||| || | || | | | ||| |||||||| ||| | || ||| ||||| Sbjct 2012 TTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCGTTGTTGTATAAAATAAGATTTTT 1953 Query 47267 taattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAAT 47326 | || | ||| | | | || || | | | ||| ||| |||| || | Sbjct 1952 CATATCTTCATCCCATAAATCGGCTCTGGTCAAATCTGTCAGAAGGTGATGATTCACTAC 1893 Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 ||||||||||||||| ||||| | || || || |||| | ||||| | ||| Sbjct 1892 AGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATGTTTGATGTAAAGGGTTCAAAAGA 1833 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 ||| | || |||| |||||| || || || || || ||||| | || | |||| Sbjct 1832 CTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATAGGAGCTAACAATAGAGA 1773 Query 47447 ATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGA 47506 ||| | | |||| |||| ||| | ||| ||||| || || | Sbjct 1772 ATTGCGCAAACCATGTTTTGCTATTTTTTCTTTGAGGGCAGCCCAGTCCCACAGTTCCGT 1713 Query 47507 TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566 ||| | ||| | ||||||||| || || |||| || | ||| || | ||| Sbjct 1712 AGGAGTTTTGTCCCACATATCATATTGTAGGATACCTTGGCTCACTGGACTCCCTTCATA 1653 Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 || | || | ||| | | || || | ||||||||| ||||| ||||||| |||||| Sbjct 1652 AGTACTGTATGCACCTTCTTTTTCTGCTAATTCACAACTAGCTTCTAATGCACCATAATA 1593 Query 47627 TATTGTTTCAAATATTTTTATGTTTA--GATTCCTTGCTT-CTGATGATTCAAAAGGATA 47683 || ||||||||||||| | || ||| || | |||||| || | ||| |||| Sbjct 1592 AATAGTTTCAAATATTTGT-TGATTAAGGAGTA-TTGCTTTCTCACT-TTCGTAAGGTAT 1536 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 ||||||||||||| ||| |||||||||||||| || || | || | Sbjct 1535 TCTCATCAACACAAATGTATCTGCCATTCCCTGAACACCAATACCGATAGGCCGGTGCTT 1476 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 |||| ||| | ||||| || | ||||| ||| | ||| || | ||| |||| Sbjct 1475 CATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAA 1416 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTAT 47863 | |||||| ||||||| ||||||| ||| | |||| | Sbjct 1415 ATTTTGAGTGACAATTTTTGTGATTTCTTTTAATTTTTTAAAATTAAATTGCTTATGTTC 1356 Query 47864 AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGT 47923 ||||||| | ||||||||||| || || ||||| ||||| || || |||| | ||| Sbjct 1355 AACAAACATGTTAAGTGCTATGGAAGCAAGATTGCATACTGCCACTTCATCTTCTGAAGT 1296 Query 47924 ATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT 47983 ||||| | | |||| || ||||| | |||||| ||||| || | ||| | ||||| Sbjct 1295 GTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTCTTTTGATT 1236 Query 47984 ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGA 48043 | | ||||||| || ||||| || | ||| | ||||| ||||| || | || | Sbjct 1235 ACTCTTCCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTGGGC 1176 Query 48044 TTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCTTTATTATCAT 48102 ||| || || || ||||| | | || | ||| | | | || | || || | Sbjct 1175 TTCTATAATTGACTTCCATA-ACTCTTGAGCTCTGACTTGTTTTATAAATCGTTTTTCTT 1117 Query 48103 GTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGAC 48162 ||| ||||| | ||||| | ||||| || || ||||| | | | | ||||||| Sbjct 1116 TTTCATATTTGGCATATAGTTCTTCAAACTCCTCTCCATAGCAGTCAGCGAGACCAGGAC 1057 Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222 | |||| ||||||||| | |||| | ||||| |||| |||||| ||||||| | || Sbjct 1056 AGTCATGAGGACACATTAGACTCCAAACTTCATCCTTTTCTACTCTTTTCATAAACAGAT 997 Query 48223 CTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCC 48282 |||||||||| | ||| ||| | || |||| ||| | |||||| || || | ||| Sbjct 996 CTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTGTTCT 937 Query 48283 TT-TTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 | |||| | ||||| || | ||| || |||||||| || ||||| || ||||| | | Sbjct 936 TCCTTAAATCTAAGAAC-TCAAATATGTCTGCATGCCAAGGCTCTAAGTAAATTGCAAAT 878 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 |||| || ||||| || || |||||||||| ||||||||||||||||||||| ||||| Sbjct 877 GCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTC 818 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 |||||||| || | ||||||||| | ||||| || || | |||||| || ||| Sbjct 817 AACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATATAAGAACCCTGGGCT 758 Query 48462 CTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC 48518 || || || || || || |||||| ||||| || |||||| |||| |||||| Sbjct 757 CTGATGCAATGTGTA--TGTAA-ACCTATGCCACCAGCAGATTTAGAAATTAAAGCACAT 701 Query 48519 CGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAA 48578 |||| | |||||| |||| ||||| || ||||| ||| ||||| || || || || Sbjct 700 TGTTTTAAAGTATCAAAAATGCCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAGCAG 641 Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 || | || || | || ||| || | ||| || |||||| |||| Sbjct 640 GAGGAAAGCTGTGGCCGCGGTGTAGCTGCTGAGAACAGTGTAGGGCTTGCATGTGTAAAA 581 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTAT 48697 |||||||||| | || ||||| || | || || ||| || || || | || || Sbjct 580 TATTTCTCTGACATCATATTATAAGTATTGATTGCACTATCAATGTCTTCACCG-TGAAT 522 Query 48698 ACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAAC 48739 ||||| || || | ||||| ||| | ||||||||||||||| Sbjct 521 GCCTATGGAGACTCTCATTAGCATGTGTTGAGGTCTTTCAAC 480 >seq139650 Length=2376 Score = 118 bits (130), Expect = 1e-21 Identities = 251/372 (67%), Gaps = 7/372 (2%) Strand=Plus/Minus Query 136626 TTAATGTAATGACTCC--TATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAA 136683 ||| | | |||||||| ||||| || ||||| || ||| | || | || || || | Sbjct 495 TTAGTCTTATGACTCCAGTATTA--CCTATGTTAGCTGAAGCTTGCAAGTCGGTTGAAAT 438 Query 136684 AGCATTTAAAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGT 136743 || | ||||| | ||||||||| || ||| | |||||||||||||| |||||||| || Sbjct 437 GGCTATGAAAAAATGTCCAAATGGCATGTTTTCTGAAATAAAATATGATGGAGAACGGGT 378 Query 136744 ACAGGTTCACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAAC 136803 || || || || || ||||| | || || |||| | | | ||||| |||| Sbjct 377 TCAAGTCCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAAT 318 Query 136804 AAAACATAAAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATC 136863 || |||||| | || |||| || ||| ||||||| || ||| || | | Sbjct 317 GGCTCACAAAGTTAGTCATTTTAAAGATTATTTACCTAAGGCATTTCCTAAAGGAGATGA 258 Query 136864 TCTTATTTTAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATT 136920 | | ||||| ||| | ||| || | | |||||| |||| | || ||||| || || Sbjct 257 TTTGATTTTGGATGCTGAAGTACTTATGGTAGATGTCAATACTGGAAAGCCATTGCCTTT 198 Query 136921 TGGCAGTTTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGT 136980 ||| | || ||||| || ||| | |||| ||| ||| | | | ||||||| | | Sbjct 197 TGGTACATTAGGTATCCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGTTTATATAT 138 Query 136981 ATTTGATTGTTT 136992 ||||||||| || Sbjct 137 ATTTGATTGCTT 126 >seq52122 Length=5755 Score = 104 bits (114), Expect = 3e-17 Identities = 131/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 ||||| | |||||| || || || ||||| || ||||| || || ||||| || | || Sbjct 5755 GAATGGACATTTTCCATGGCAATTTGAAAACCATAAAAGCACCTGGCTTCGGTCACTTGA 5696 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 || || | || | || ||||| || |||||||| || |||||| |||||| || Sbjct 5695 ACCTCTTGTGAGAACCGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCGAAG 5636 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTC---ATCTGAGGTTAATGTATTCCAATC 19439 |||||||| ||||| || ||||||||||| || |||| ||||||| | |||||| Sbjct 5635 AATGCTAAGACATGCTTGATAAAATGTTTCTCACAATCT---TTTAATGTCTCCCAATC 5580 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/103 (81%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 ||||| ||| |||||| ||||||||||| | |||||||| || || || |||||||||| Sbjct 5443 TAATACCTT-AGATAAGTCTACTTCTTCTGCAGTCCAAAAGGATGCTTCAGCTTTTTTAT 5385 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| | ||| || || ||||||| || || |||||||| || Sbjct 5384 ACATCTGCCAAATGTCTGGATATTGGATTGGGAATATAACGAA 5342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559609235667240