Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq121238 387 1e-102 seq54613 167 2e-36 seq55701 122 7e-23 seq37844 120 2e-22 seq110694 116 3e-21 seq147093 84.2 2e-11 >seq121238 Length=2101 Score = 387 bits (428), Expect = 1e-102 Identities = 728/1061 (69%), Gaps = 17/1061 (2%) Strand=Plus/Plus Query 42471 CTATAGTCTACGACGCCATCTTCCCAAGTACCCGAAACTGGACCTGTCGCAATACCCGTG 42530 || ||||| || || || |||| |||||||||| || || || || || | || ||| Sbjct 402 CTGTAGTCGACCACTCCGTCTTGCCAAGTACCCTTGACAGGTCCAGTAGCGTTGCCTGTG 461 Query 42531 AAGGGATTATTGTTTTGGTAATTGCTTACTCCGGTCCAACCTCGTCCGTACATGGCCACG 42590 |||||||| |||| || ||||| ||||| |||||||| || || |||||||| || Sbjct 462 AAGGGATTGTTGTCTTCGTAATCATGAACTCCAGTCCAACCACGACCATACATGGCAACA 521 Query 42591 CCTAAAATTATTTTTTGAGGTTTCACTTTTTGTTTCAA-AAGCGTTTGAACGGCATAATC 42649 |||| | || || | ||| |||||| ||| || ||| ||| | | | | || Sbjct 522 CCTACTACAATCTTCTTAGGATTCACTCCCTGTGCTAACAAGTATTTTA-CTCCGAAGTC 580 Query 42650 TGCCGTGTAATGTTCGTTTTCGTTCCATTCGGGAGCATACAGATTTGTTTGATGGCCCAA 42709 | |||||| ||| || ||||||| | || || |||| ||||||||| || | Sbjct 581 AGAAGTGTAAGTTTCCTTGGGGTTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAG 640 Query 42710 ATCTGAATTTGACCAAGCACCTTTAAAGTCATAGCTCATTAAAAATATTTTATCCAAATA 42769 | ||||||||| |||||||| ||||| || ||||| || || || | ||||| ||| Sbjct 641 AGTATCATTTGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATA 700 Query 42770 GTTTTGAGCATCGTTGTAATCGACAATAGCGATTTTGTCGTCTCCCGCACTAATTGCGCT 42829 |||||||| | | |||| || |||| |||||| || || || ||||| || Sbjct 701 ATTTTGAGCCTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGA 760 Query 42830 AGTCAATTCGTATTTGCGATTAGTTTCGTTTTCT---AGTTCGTCCAGCATGTCGCGCAA 42886 ||| ||||||||||| | | ||| || || ||||| || ||||| || || || Sbjct 761 AGTTAATTCGTATTTCTTACCA--TTC-TTAGCTGAGAGTTCATCGAGCATCTCACGTAA 817 Query 42887 TTCTCGTAACAAAACTACATACGTAAGACCGTCATTTTGAGGATCTCCAATTGTC-GGAT 42945 |||| | |||| |||||| | ||| || | | || |||| | ||| || | Sbjct 818 TTCTTTCATCAAACTTACATAACAATCACCATCTTCTGGA----CTCCCAAGGTCAGGGT 873 Query 42946 TAGCTCCTTTACCACCGGGAAATTCCCAATCAATATCGACGCCGTCAAAAAATTTCCAAG 43005 |||| ||||| ||||| || || |||||||| ||||| || || || || |||||||| | Sbjct 874 TAGCGCCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATG 933 Query 43006 TGAGCAAAAACTCACGTACTGAATCCACAAATATTTTACGCTTG--TTTGCATCGCTGAA 43063 | | | |||||| ||||| | ||||||| | | | ||| |||| || ||| Sbjct 934 TTAAAAGAAACTCCTTGACTGACTGCACAAATCGTGTTCTCTTAGATTTG--TCAACGAA 991 Query 43064 AAAATAAAACGGGTCGGACAATGTCCATCCACCTATCGAAGGTAACACTTTAAGATGAGG 43123 ||| | || || || | | ||||| ||||| || || || | | || | || || Sbjct 992 AAAGAAGAATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAATCGGG 1051 Query 43124 GTTAGCTTTTTTGGCTGCCATTAATTGACCAAAGTTGCCTTTGTACGGTTCATTCCACGA 43183 |||| |||| | ||| ||||| ||||| ||||||||||| ||||||||||| || Sbjct 1052 TCGGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCATGA 1111 Query 43184 GGAAACACCTTTTTGTGGTTTCTGTATAGCCGCCCACGGATCGTGTATGGAAACTTTGAA 43243 || | ||| |||||||||| |||| || ||||| ||||| || || || |||||||| Sbjct 1112 AGACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACTTTGAA 1171 Query 43244 GTCGCTTCGACCCGCACAAGATTTTTGAAGAGCTTCAAAACTGCCAGGAATAGATTTTAA 43303 || || || ||||||| || | |||| |||||||| || |||||| Sbjct 1172 ATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCGATCTCTTTTAA 1231 Query 43304 ACTGTCATTAATGCCGTCACCGCCGCATATCGGAATAAATCCGTACAACAAATGAGACAA 43363 |||||||| || |||||||||||||| || ||||| || ||||| | | ||||| | Sbjct 1232 GCTGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATGAGTAAG 1291 Query 43364 ATTGGGTAAAGGCACTTTGTTGACAGGAAATGAACGACCGTATACGCCCCATTCTACAAA 43423 ||| |||| ||| | | ||||| ||| | | || || ||||||||||| || Sbjct 1292 ATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATAAACACCCCATTCTACGAA 1351 Query 43424 ATAAGCGGCCACGGCTTTATCGGTGCCCAATTCGAAAGGTTTATTGTTTTCTTGCCATGT 43483 |||||| |||| |||| | | | | ||| || ||||| |||||| | ||| Sbjct 1352 ATAAGCACCCACAACTTTTCCAGAGGTTTGCTTGAATGGCTTATTTTTTTCTCCCATTGT 1411 Query 43484 ATATGGCAAAGGATCTAAATGCGAACCGTCCGTATCAGCGA 43524 |||| || ||| |||||| || || |||||||||| Sbjct 1412 ATATTCCAGGGGAGGTAAATGACTTCCATCGGTATCAGCGA 1452 >seq54613 Length=3623 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | |||| |||||||||||| || ||||| || ||||| || | Sbjct 2669 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAA 2610 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || |||||||| || ||||| |||||||| |||||||| || ||| Sbjct 2609 AGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 2550 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || ||||||||||| ||||||| |||| | ||| || || | ||| ||| Sbjct 2549 ATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACT 2490 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | ||||| || || | ||||| ||||| |||||||| Sbjct 2489 TCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT 2443 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || | ||||||||| ||||||||||| ||||| || || | Sbjct 3572 CCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGAT 3513 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || ||||||||||| ||||| || | |||||| ||||| || || Sbjct 3512 AGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 3453 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| ||||| ||||| ||||||| |||| | || ||||| | ||| ||| Sbjct 3452 ATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACT 3393 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||| || || | || |||||||| |||||||| Sbjct 3392 TCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 143 bits (158), Expect = 2e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 101276 GATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCA 101335 ||||||||||| |||||||| || | | || | |||| || ||||||||||| ||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACA 101395 || || | |||||| ||||| || || ||||| ||||| ||||| ||||| ||||||| Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 101396 ATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTT 101455 |||| | || ||||| | ||| ||||| | ||||| ||||| || || | || ||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 101456 ACAAATATCTGCAT 101469 ||||| |||||||| Sbjct 2900 ACAAAGATCTGCAT 2887 Score = 113 bits (124), Expect = 4e-20 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | ||||| |||||||| || || ||||| || ||||| || || Sbjct 3344 CCTCCTCGCAGACGGAGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTC--CG 3287 Query 101303 ATA--GTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 ||| || | | |||| |||| |||||| ||||| || || | |||||||||||| || | Sbjct 3286 ATAAGGTACGGCCATCTTCCAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGAG 3227 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || || || ||||| || || || ||| |||| | |||||||| | || | Sbjct 3226 GAATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATGGTGTCAGATGCCTCTA 3167 Query 101421 CTTCAAGAGT 101430 | || ||||| Sbjct 3166 CCTCCAGAGT 3157 >seq55701 Length=1651 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||||| || | || | ||||||||||| || |||||||| || | Sbjct 70 CCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGAT 129 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || | ||||| || ||||| || | | || ||||| || ||| Sbjct 130 AGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 189 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| |||||||| |||||||| || ||| |||| | || ||||| | ||||||| Sbjct 190 ATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACT 249 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | || ||||| || | || |||||||| || ||||| Sbjct 250 TCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACAAAAATTTGCAT 296 >seq37844 Length=1442 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| || ||||| |||||||| || ||||| || | | || | | |||| || Sbjct 494 ACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCT 435 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| ||||| || || | |||||||||||| || ||||| || || || ||||| Sbjct 434 AGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCTTGG 375 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| |||| | |||||| | | ||||| || | ||| | ||||| Sbjct 374 ATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTAATGGTTTTC 315 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 314 CCAGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq110694 Length=236 Score = 116 bits (128), Expect = 3e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||||||||| || ||||| || | || ||||| || || ||||| || || | Sbjct 53 TTCCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCAG 112 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | |||| || | |||||| || ||||| |||| | |||||| || || | Sbjct 113 ACAATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGAG 172 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| |||||||| || ||||| ||| || ||| |||| | || ||||| | ||||| Sbjct 173 GAATACCTTCTTTGTCCTGAATCTTTGCCTTAACATTTTCGATTGTATCAGAAGCTTCCA 232 Query 101421 CTTC 101424 |||| Sbjct 233 CTTC 236 >seq147093 Length=1026 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 84561 TTCCACGTTTCCCAAATCACCAACATGTCGTATGGGCGAGTCAGGTCCCCCGTGATCCAT 84620 ||| | ||||||||| ||||||||||||| | | ||| ||||| || || || ||| | Sbjct 152 TTCAATGTTTCCCAAGTCACCAACATGTCTGACCGACGAATCAGGACCTCCATGGTCCTT 211 Query 84621 ATTGGTGGGATTAAAGTGTTCGCCTGCAGATGTACAACCGTTACTGATGTCGCCAAATTC 84680 || ||||| ||||| || || || || || || || || |||| ||||| || Sbjct 212 TTTTAGAGGATTGAAGTGAGGACCAGCTGAGGTGCAGCCATTTGTGTTGTCACCAAACTC 271 Query 84681 GTGTACATGCATGCCGTGTTTACC 84704 ||| || || | |||||||||||| Sbjct 272 GTGGACGTGAAAGCCGTGTTTACC 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394560297969537