Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq32923 163 2e-35 seq121238 132 4e-26 seq54613 109 4e-19 seq37844 100 2e-16 seq55701 96.9 3e-15 seq105292 87.8 1e-12 >seq32923 Length=5192 Score = 163 bits (180), Expect = 2e-35 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 7840 TTCAAGGACTGGCCGAAGAGTATAAAGCAGAAACCAAAGCAGCTTGCCGAAGCTGGATTA 7899 |||| |||||||| ||| | |||||||| || || | || |||||||| ||||| Sbjct 1729 TTCAGCGACTGGCCTCGCAGTTTGAAGCAGAAGCCCGAGGAACTCGCCGAAGCGGGATTC 1670 Query 7900 TACTACACGGGCCGCGGTGATATGACAAAGTGTTTCTACTGTGACGGGGGTCTCAAAGAT 7959 | |||||| |||| || || | || ||||| |||||||||||||| || ||||| || Sbjct 1669 TTCTACACCGGCCAGGGCGACAAAACTAAGTGCTTCTACTGTGACGGCGGCCTCAAGGAC 1610 Query 7960 TGGGAGGAAAACGATATACCGTGGGAGCAACACGCGCGCTGGTTTGATAAATGCGCATAT 8019 |||||| | |||| | ||||||||||| |||||||||||||| || ||||| || Sbjct 1609 TGGGAGAACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTAC 1550 Query 8020 GTCAAACTAGTCAAAGGGGAGGAATATGTTCAGAAGGTAATTACTGAAGCGTGCGCCGTT 8079 || | || ||||| || || ||||| |||||||| || || || ||||||||| || Sbjct 1549 GTTCAGCTGGTCAAGGGCCGAGAGTATGTCCAGAAGGTGATCACAGAGGCGTGCGCCCTT 1490 >seq121238 Length=2101 Score = 132 bits (146), Expect = 4e-26 Identities = 469/730 (64%), Gaps = 7/730 (1%) Strand=Plus/Minus Query 27695 GGAACCGTGGTGGCCGCTTACTTTGTCGAGTGGGGTGTGTATGGTAGACAGTATCCGGCC 27754 |||| || |||| ||||| || || || |||||||| ||| ||| | | || | Sbjct 1372 GGAAAAGTTGTGGGTGCTTATTTCGTAGAATGGGGTGTTTATCCTAGGAAATTCCCTGTG 1313 Query 27755 AACAAACTACCCATACCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGC 27814 | |||| ||||| ||||| || ||| | || |||||||| | || ||||||||| Sbjct 1312 GATCGTATACCTATACCTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGC 1253 Query 27815 GGAGACGGTATCAACGATAGCCTAAAACAGATCCCCAATTC--TTTTGAGGTCCTCCAAA 27872 || ||||||||||| || ||| ||||| ||||| || | ||| | | | || Sbjct 1252 GGTGACGGTATCAATGACAGCTTAAAAGAGATCG--AAGGCAGTTTCCAAGCATTACAGC 1195 Query 27873 AGTCATGCTCAAACCGAGCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGC 27932 || || ||| | || || | || || || ||| ||||| || | | Sbjct 1194 GATCTTGTAGCGGCCGCGAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTAC 1135 Query 27933 AAAAACCGCAAAAGGGTGTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGT 27992 ||||||| |||| || | | ||||| || || ||||| || || |||||||| | Sbjct 1134 AAAAACCACAAAGAGGATTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAAT 1075 Query 27993 TGATGGCCATCAAACGACACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGA 28052 ||||| | |||||| | || ||| | | || || ||||| ||||||||||||| Sbjct 1074 TGATGTCTCTCAAACAAGCCCGACCCGATTTGAAGATTCTTCCCTCTATTGGTGGGTGGA 1015 Query 28053 CTCTGAGCGATCCATTCTTTTTTATGCACGACCCGGCCAAGCGTGCCGTGTTTGTAGAGT 28112 | || ||||||||||| ||| | ||| | ||| | | ||||| ||| Sbjct 1014 CGCTTGCTGATCCATTCTTCTTTTTCGTTGACAAATCTAAGAGAACACGATTTGTGCAGT 955 Query 28113 CTGTGCGCGAATTTCTGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAGT 28172 | || || ||||| ||| ||||| ||||| || || || ||| | || ||||||| Sbjct 954 CAGTCAAGGAGTTTCTTTTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGT 895 Query 28173 TTCCGGGTGGAAAGGGAGCCAACCCCGCGATCGGTAACCCCGACATTGACGCAAAAACGT 28232 | || ||||| || || || ||||| | | || | || || || | | | Sbjct 894 TCCCTGGTGGCAAAGGCGCTAACCCTGACCTTGGGAGTCCAGA---AGATGGTGATTGTT 838 Query 28233 ACACCGCGCTGTTGCGCGAACTAAGATTTATGCTGGACGAGTTGGCGGaaaaaaaCGATC 28292 | || || ||| || | ||||| || || | | | || || | | Sbjct 837 ATGTAAGTTTGATGAAAGAATTACGTGAGATGCTCGATGAACTCTCAGCTAAGAATGGTA 778 Query 28293 GCGTCTACCAACTAACCACCGCTATTAGCGCCGGGCATGATAAAATACAAGTGGTCAACT 28352 ||| || |||| | ||||||||||| ||| |||||||| ||||| || ||| Sbjct 777 AGAAATACGAATTAACTTCTGCTATTAGCGCTGGGTGGGATAAAATCCAAGTTGTTGACT 718 Query 28353 ACGCTTCGGCCCAAAAACATCTGGACCACATTTTCGTTATGAGTTACGATTTTAGGGGCG 28412 || ||| ||||| || |||| || |||||| | ||||||||||| || | || | Sbjct 717 ACAGCAAGGCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAAGGTG 658 Query 28413 CCTGGTCCAA 28422 ||||||| || Sbjct 657 CCTGGTCAAA 648 >seq54613 Length=3623 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| || || ||| ||||| || ||||| ||||| || | || Sbjct 2660 AGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGTGTACGG 2601 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || ||||| || ||||| |||| || |||||||| | |||| ||| ||| Sbjct 2600 CCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCC 2541 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||||||| | | || || || || || || |||| ||| Sbjct 2540 TTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCAACTTCCAAAGTA 2481 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| | ||||| |||||||||||||| Sbjct 2480 ATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCAT 2443 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||||||||| |||||||| | ||| | || || || |||||||| ||||| Sbjct 3077 TCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAG 3018 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||| ||||| | || | |||||| ||||| || || ||||||| Sbjct 3017 ATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTT 2958 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || || | || || ||||| || || | || |||||| Sbjct 2957 TCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTTACA 2898 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 2897 AAGATCTGCAT 2887 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| ||| || ||| |||||||||||||| || |||||||| | ||| Sbjct 3563 AGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGATAGTGTGCGA 3504 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || |||||||| ||||| || || ||||| ||||| | || | ||||| Sbjct 3503 CCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATACCCTCT 3444 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || || ||||||| | | | || || || || || || | || Sbjct 3443 TTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTG 3384 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || |||||||| |||||||| Sbjct 3383 ATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 >seq37844 Length=1442 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| ||||| || || ||||||||| || ||||| ||||| || | || Sbjct 503 AGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGG 444 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||| || || || || || ||||||||||| | ||||| |||||| Sbjct 443 CCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGGGGAATACCCTCC 384 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || | | ||||||||| | ||| Sbjct 383 TTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTA 324 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || || |||||||||||||| Sbjct 323 ATGGTTTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || | || |||||| ||||||||||| || | ||| | ||| Sbjct 275 AGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCGGCGAGAGTACGA 216 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||||||| || || || || || ||||| || | |||| ||||| Sbjct 215 CCATCCTCCAGCTGCTTACCAGCGAAAATTAGACGTTGTTGGTCTGGAGGAATACCCTCT 156 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | || || || | || || || | || Sbjct 155 TTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCCGAAGGTTCAACTTCTAATGTG 96 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || |||||||| |||||||| Sbjct 95 ATTGTTTTCCCTGTGAGTGTCTTTACAAAGATCTGCAT 58 >seq55701 Length=1651 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||||||||| ||||||||| | || | || || | |||||| || ||||| Sbjct 106 TCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAA 165 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||| || ||||| | ||||| |||||| || || ||| || || ||| Sbjct 166 ATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTT 225 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || ||||| |||| ||||| || || || || | || |||||| Sbjct 226 TCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACA 285 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 286 AAAATTTGCAT 296 >seq105292 Length=7556 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 || || || ||| |||||| || | ||||||||| || || || || || || |||| Sbjct 335 GGGTAGAAAATTCTTTCACATATCAGTTGAGCAATTCTATCACCTTTTTTAACTGCAAAA 276 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 ||| |||||||||||||| ||||||||| | ||| || | ||| || ||||| || Sbjct 275 TCTTCACTGGAATGATTGAACAACACCACTCCAATGTTTCCACGGTAGTCTTCATCTATG 216 Query 9187 ACACCAGC 9194 |||||||| Sbjct 215 ACACCAGC 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379286009441343