Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq121238 241 1e-58 seq55701 102 7e-17 seq54613 93.3 4e-14 seq37844 87.8 2e-12 >seq121238 Length=2101 Score = 241 bits (266), Expect = 1e-58 Identities = 771/1185 (65%), Gaps = 19/1185 (2%) Strand=Plus/Plus Query 105818 TGTTCATGGCATTGAGTAAATCGCCGTTATCGGCATCTATTTCCCAAGCAAACAAACCGC 105877 ||||||||||||| |||| ||| ||||||||||| || |||||||||||||| | ||||| Sbjct 181 TGTTCATGGCATTCAGTAGATCACCGTTATCGGCGTCGATTTCCCAAGCAAAGAGACCGC 240 Query 105878 CCAGTTTGTTTCGATCGACATATTTAACCTTGCCCAAAACAGAATCGA-CGCTATCAAAC 105936 | || ||||| ||||| ||| |||| | | ||| || || | | ||||| | Sbjct 241 CTAGCTTGTTATTTCTTACATACTTACCCTTCTCAATAACTGA-TCTAGCATTATCATAG 299 Query 105937 GAAATTAAATCCNNNNNNNNNNNNNCAAAAACGTACGAAGCTTGAGCGACATTGTCAAAC 105996 | | | || || ||||| | ||||| ||||||||||| | Sbjct 300 GTTACAAGGTCTCCAGTTGATGGTCTGAAGACGTAAGGTGCTTGGGCGACATTGTCGTAA 359 Query 105997 GTGTACACGTACGTG--TTCAGTT--TTGTTTG--AATCTGTCGGTAATCTACGACGCCG 106050 | || | || || || || || ||| ||| | | ||| || || || ||| Sbjct 360 TGGAACTCCCACTTGCCTTGAGCAACTTCATTGGCAATTTCCCTGTAGTCGACCACTCCG 419 Query 106051 TCCTCCCAAGTGCCC--GACACGGGCCCGTTGCCGATTCCCGAAAAATAGTTGTTGCCAG 106108 || | |||||| ||| |||| || || || || | | || | || |||||| | Sbjct 420 TCTTGCCAAGTACCCTTGACA-GGTCCAGTAGC-GTTGCCTGTGAAGGGATTGTTGTCTT 477 Query 106109 TATAATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTGT 106168 |||| || || ||||| || || || ||||||||||| ||||| | || || | Sbjct 478 CGTAATCATGAACTCCAGTCCAACCACGACCATACATGGCAACACCTACTACAATCTTCT 537 Query 106169 TGGGATCGACGTCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCTT 106228 | |||| || | ||| | ||| | || || | | | ||||| |||| | Sbjct 538 TAGGATTCACTCCCTGTGCTAACAAGTATTTTACTCCGAAGTCAGAAGTGTAAGTTTCCT 597 Query 106229 CGGAATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGTGTTCGACCACG 106288 || ||||| |||||| || | | ||||||| || ||| || ||||| | Sbjct 598 TGGGGTTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAAGAGTATCATTTGACCAGG 657 Query 106289 CCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTAT 106348 | ||||| || ||||||||||| | |||||| | |||| ||| ||||| || | | | | Sbjct 658 CACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGAGCCTTGCTGT 717 Query 106349 AGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAATT 106408 ||| || || ||||| || | || ||||| ||||| ||||||||||| | Sbjct 718 AGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCAGAAGTTAATTCGTATTTCT 777 Query 106409 TGCCCGTTTGCAGTTCTAATTCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGACAT 106468 | || | | | | ||| || ||||| | || || |||| || || |||| Sbjct 778 TACCATTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAATTCTTTCATCAAACTTACAT 837 Query 106469 ATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGA-AGGATTGGCCCCTTTGCCGCCTGGA 106527 | || | || ||| | | | ||||| | ||| || || |||||||| || || Sbjct 838 AACAATCACCATC---TTCTGGA-CTCCCAAGGTCAGGGTTAGCGCCTTTGCCACCAGGG 893 Query 106528 AATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTACA 106587 || |||||||| ||||| || ||||| || |||||||| | | ||| ||||| || Sbjct 894 AACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAAAAGAAACTCCTTGACT 953 Query 106588 GAATTTACAAACACGT-TTCTTTTTTCAACGTCATGCATAAAATAGAAGGGGTCTGATAG 106646 || | ||||| ||| |||| || |||| | ||| |||| || || | || Sbjct 954 GACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAACGAAAAAGAAGAATGGATCAGCAAG 1012 Query 106647 CGTCCAACCGCCTATAGACGGAAGCACTTTTAAATGCGGATTTGCCAATTTAGCCGCCAT 106706 |||||| || || ||||| ||||| | || |||| || || ||| | ||| Sbjct 1013 CGTCCACCCACCAATAGAGGGAAGAATCTTCAAATCGGGTCGGGCTTGTTTGAGAGACAT 1072 Query 106707 CAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGCGGCTT 106766 ||| || ||||| || || ||||| || || ||||| | |||| ||| |||| || || Sbjct 1073 CAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCATGAAGACAATCCTCTTTGTGGTTT 1132 Query 106767 CTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTGCATGA 106826 |||| || ||||| ||||| || || || ||||| ||||| |||| || | || || Sbjct 1133 TTGTAATGCTGCCCATGGATCATGGATTGAGACTTTGAAATCCTCGCGGCCGCTACAAGA 1192 Query 106827 TTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCATCACC 106886 | || || | || ||||| || || ||||||| || || || || ||||| Sbjct 1193 TCGCTGTAATGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGTCATTGATACCGTCACC 1252 Query 106887 GCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACTTTATC 106946 |||||| || ||||| || ||||| | || ||| | | ||| || | || | ||| Sbjct 1253 GCCGCAAATTGGAATGAAGCCGTAGAGTAGATGAGTAAGATTAGGTATAGGTATACGATC 1312 Query 106947 TACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGC 106991 || || || || | ||| || |||||||| || ||||| || Sbjct 1313 CACAGGGAATTTCCTAGGATAAACACCCCATTCTACGAAATAAGC 1357 >seq55701 Length=1651 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| |||||||| ||| | || || || || ||||| ||| |||| |||| Sbjct 297 AATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTC 238 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | ||| ||||| || |||||||| | ||| |||||| Sbjct 237 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 178 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || |||||||| ||||| || || || | |||||| ||| | | || || || Sbjct 177 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACTCTATCTGACTACAA 118 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||||||| ||||| ||||| || | | |||| ||||| Sbjct 117 TATTCAGAAAGAATCTACTTTGCACCTGGTACTACGTCTGAGAGGTGGGAT 67 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||| ||||| || |||||||| || ||| |||| |||| Sbjct 524 ATGCAAATCTTCGTAAAAACCTTAACCGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 465 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| ||| || ||||||||||| | || ||||||| Sbjct 464 GATACAATCGAGAACGTAAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGATCAA 405 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| || || || || || ||| | |||||| || || | || ||||| Sbjct 404 CAAAGACTAATTTTCGCCGGAAAGCAACTAGAAGATGGGCGTACATTGTCAGACTATAAT 345 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 ||||| || ||||| ||| ||||| Sbjct 344 ATTCAGAAGGAATCAACTTTGCAC 321 >seq54613 Length=3623 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| ||| | || || ||||| || || ||| ||| | || Sbjct 3346 ATGCAGATCTTTGTAAAGACACTTACAGGGAAAACAATCACTTTAGAAGTTGAAGCCTCT 3405 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| ||||||||||| | || ||||| Sbjct 3406 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGTATCCCACCTGATCAG 3465 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 ||| | ||||||||||| || || ||||| |||||| || | ||||| | || |||| Sbjct 3466 CAGCGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGTCGCACACTAT--CTGACTATA 3523 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | |||||||||||||| || || || ||||| | | | |||||||| || Sbjct 3524 ATATTCAAAAAGAATCCACCCTTCATCTGGTACTGCGTCTGCGAGGAGGCAT 3575 >seq37844 Length=1442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| || ||| | || || ||||||||||| || ||| || | Sbjct 286 ATGCAGATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTAGAGGTGGAGCCAGCC 345 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||| ||||| | ||| ||||||| Sbjct 346 GACACTATTGAAAATGTTAAGGCTAAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAA 405 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | |||||||| || ||||| ||| | |||||| || || | || || ||| Sbjct 406 CAGCGTCTTATCTTCGCAGGCAAGCAACTAGAAGATGGCCGCACCCTGTCTGACTACAAC 465 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || |||||||| ||||||||||| Sbjct 466 ATCCAAAAAGAGTCTACTCTGCA 488 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || |||||||| ||| | || || ||||| || || ||| |||||||| Sbjct 58 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACAATCACATTAGAAGTTGAACCTTCG 117 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || || ||| ||||||||||| | || ||| ||| Sbjct 118 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAA 177 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || || || || || || |||| ||| | ||| | ||||| || || Sbjct 178 CAACGTCTAATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACTCTCGCCGACTACAAT 237 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| |||||| ||||| ||||||| | | |||||||| || Sbjct 238 ATTCAGAAAGAGTCTACTTTGCACTTGGTATTGCGTCTCCGAGGAGGTAT 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423560417740839