Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq7548 179 2e-40 >seq7548 Length=2633 Score = 179 bits (198), Expect = 2e-40 Identities = 259/363 (71%), Gaps = 2/363 (1%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| | | |||||| | |||||| ||||| | |||||||| | ||||| |||||| Sbjct 1018 TCTACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTC 959 Query 25982 ATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 |||||||| || || ||| ||||| ||| ||||||||| ||||| || |||| ||||| Sbjct 958 ATTTCTTCCTTACCTGTG-TTCTTCCTTAAATCTAAGAACTCAAATATGTCTGCATGCCA 900 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 || ||||| || || ||||| ||| | ||| ||||||||||||||| ||||| Sbjct 899 AGGCTCTAAGTAAATTGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCT 840 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 ||||| | || | ||| |||||||||| |||| ||| |||| | || || |||| Sbjct 839 GGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCC 780 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 | || | || || | ||| || || | ||| | ||| || |||||||| | Sbjct 779 AGCTATATAAGAACCCTGGGCTCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGA 720 Query 26221 TTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 ||| ||||| ||||| | | | ||||| ||||| |||| |||||||| |||| Sbjct 719 TTTAGAAATTAAAGCACATTGTTTTAAAGTATCAAAAATGCCTTCAATGCTATCGTCTTT 660 Query 26281 CAT 26283 ||| Sbjct 659 CAT 657 Score = 113 bits (124), Expect = 2e-20 Identities = 340/511 (67%), Gaps = 18/511 (4%) Strand=Plus/Minus Query 24649 ATTTT--CTTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTC-TAAGATA 24705 ||||| |||| |||| || || || |||| | |||| ||||| || | |||| || Sbjct 2257 ATTTTACCTTTGTCTACGGTGAACTGTATAGCATTTGCTGCCGGTTTTGTGCGTAAG-TA 2199 Query 24706 ATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGC 24765 |||||||| ||||| || | | |||||| ||| ||||| || || |||||||| | Sbjct 2198 GTACATTCCTGTTTTTAAGCCCATTTTCCAAGCGTGGAAATGAATCGACGTTAGTTTCCC 2139 Query 24766 AATGTTTG-CTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTC 24824 | ||| | || | | | | | ||| | |||||| |||| | ||| | || Sbjct 2138 ATAGTTAGGCTTAG-CAACATGTATGTTAAAAGATTGACTTTGGTCTATGAAAGCTCCTC 2080 Query 24825 TATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCT 24884 |||| || || | | ||| |||||||| || || || | | |||||||| | Sbjct 2079 TATCAGCCGCCATTTGTATGGACGTTTTCAATGAAATCTCCCATACGGTTTTGTACAAAT 2020 Query 24885 CTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCATT-TTCTCTCAAT--A 24941 || |||| || | ||||| || |||| | ||| | ||||| || || | | || | Sbjct 2019 CTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCGTTGTTGTATAAAATAA 1960 Query 24942 GATTCAATCTCATATTCGGTGTCCAAAGATTAATTTTT-TCAAGATCTCTAATCAAGTGT 25000 |||| | |||||| ||| | || | | |||| |||| | | | ||| Sbjct 1959 GATT---TTTCATATCTTCATCCCATAAATCGGCTCTGGTCAA-ATCTGTCAGAAGGTGA 1904 Query 25001 TTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA--GTTTGAAGTGA 25058 | ||| | | | |||||||||||| || |||||||| ||| ||| |||||| || | Sbjct 1903 TGATTCACTACAGGAAATTCTCCAGATAAGACTCTTCT--TTGGTAAATGTTTGATGTAA 1846 Query 25059 ATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATG 25118 | ||||||||| | ||| | || || | ||||| | ||||| || |||||||| | Sbjct 1845 AGGGTTCAAAAGACTCAGTGTTACCAAGAATTTGTGCTGTAGAGGCGGTTGGCATAGGAG 1786 Query 25119 CTATTAATAGCGAATTTCTCAAACCATATTT 25149 ||| ||||| ||||| | |||||||| ||| Sbjct 1785 CTAACAATAGAGAATTGCGCAAACCATGTTT 1755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 251942921436575