Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq54613 179 7e-40 seq55701 125 1e-23 seq2515 118 2e-21 seq148454 100 5e-16 seq15756 100 5e-16 seq110694 87.8 3e-12 >seq54613 Length=3623 Score = 179 bits (198), Expect = 7e-40 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||| || || ||||| ||||| | |||| ||| || || || Sbjct 2678 ATTTGCATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTG 2619 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| |||||||| ||||| |||||||| || | |||||| Sbjct 2618 TAGTCAGAAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGA 2559 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| ||||||| ||||| |||| ||||||||||||| Sbjct 2558 TCTGGAGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAA 2499 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | |||||||| | ||| || |||||||| || || ||||| ||||| || |||||||| Sbjct 2498 GCTTCAACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTT 2440 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||| || || ||||||||||| | || | ||||| ||||||| Sbjct 3581 ATTTGCATGCCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTA 3522 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| |||| || | | ||| |||||||| || || ||||| || | | ||| ||| Sbjct 3521 TAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGA 3462 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || || ||||| ||||| ||||| | ||||| |||| ||| ||||| || Sbjct 3461 TCAGGTGGGATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAG 3402 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||||| ||| || ||||| ||||| || || |||||||| || ||||| Sbjct 3401 GCTTCAACTTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 >seq55701 Length=1651 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| || | || || || | ||||| || | || || |||||| Sbjct 288 AATTTGCATTCCACCCCTAAGGCGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATT 347 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || || || | ||| |||| ||| |||||||| ||||||| ||| ||||| Sbjct 348 ATAGTCTGACAATGTACGCCCATCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTG 407 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || || ||||| || || || || | |||| || || ||||| || Sbjct 408 ATCTGGAGGAATGCCCTCTTTGTCCTGAATCTTTGCCTTTACGTTCTCGATTGTATCAGA 467 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | || || ||||| || |||| |||||||| || |||||||| Sbjct 468 AGCTTCCACTTCCAATGTGATGGTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCAT 524 >seq2515 Length=4501 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 |||| || | | ||| || || ||||||||||| | || || ||| ||||| || | Sbjct 3695 TACCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATAATCAG 3636 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | || || | ||| |||| || || || ||||| || |||| || || || || | Sbjct 3635 ACAATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCTGGTG 3576 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | || ||||| |||||||| || || | ||||| |||| ||||||||| || | || | Sbjct 3575 GAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGCTTCCA 3516 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || || || || |||||||| || || || || || || ||||||||| Sbjct 3515 CCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 3466 >seq148454 Length=3542 Score = 100 bits (110), Expect = 5e-16 Identities = 93/114 (82%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 263795 GGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCTTGTC 263854 |||||||||||||||||| || | |||||| || || ||| |||| ||| ||| || | Sbjct 2510 GGGAGGTCCGTAGCTACTGAGTGAACCGGTGATGGCGGGGAGCCGGCCTACTTCCCTGCC 2451 Query 263855 ATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGTAAT-ATA-ATATAAT 263906 | |||||||||||||||| |||||||||||| ||||||| ||| ||||||| Sbjct 2450 AACAGATATGTTGAAGCGGTAAAGCAATCATAT-GTGGTAATAATACATATAAT 2398 >seq15756 Length=1133 Score = 100 bits (110), Expect = 5e-16 Identities = 89/110 (81%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 263791 TAAAGGGAGGTCCGTAGCTACTATGTAAGCCGGTGCTGACGAGGAACCGGTCTAACTCCT 263850 || ||||||||||| ||||||| || | |||||| || |||||| |||| ||| ||| Sbjct 617 TATAGGGAGGTCCGCAGCTACTGAGTGAACCGGTGATGGCGAGGAGCCGGCCTACTTCCC 676 Query 263851 TGTCATCAGATATGTTGAAGCGTATAAGCAATCATATAATGGTAATATAA 263900 || || |||||||||||||||| |||||||||||| |||||||| || Sbjct 677 TGCCAACAGATATGTTGAAGCGGTAAAGCAATCATAT-GTGGTAATAAAA 725 >seq110694 Length=236 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| || || | || | ||||| || | || || |||||| Sbjct 46 ATTTGCATTCCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTA 105 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | ||| || | ||| ||||| |||||||| | |||||||| Sbjct 106 TAGTCAGACAATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGG 165 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||| || || || || | || | |||| || ||||| ||| Sbjct 166 TCTGGAGGAATACCTTCTTTGTCCTGAATCTTTGCCTTAACATTTTCGATTGTATCAGAA 225 Query 193305 GACTCAACTTC 193315 | || ||||| Sbjct 226 GCTTCCACTTC 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895653850551120