Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2515 120 4e-22 seq37844 102 1e-16 seq52122 93.3 6e-14 seq49004 93.3 6e-14 seq199373 89.7 7e-13 seq54614 86.0 9e-12 >seq2515 Length=4501 Score = 120 bits (132), Expect = 4e-22 Identities = 142/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || | || || ||||| ||||| | || || |||| || Sbjct 3466 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTTGAGGTGGAAGCCTC 3525 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| ||| || ||| ||| || |||||||| ||||| || || ||||| || Sbjct 3526 TGATACTATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCA 3585 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| ||||||| | ||| ||||||||||| |||||| | || || || |||||||| Sbjct 3586 GCAACGATTGATCTTTGCTGGTAAGCAGCTAGAAGATGGACGTACATTGTCTGATTATAA 3645 Query 156002 TATATCCAAAG 156012 || || |||| Sbjct 3646 CAT-TCAAAAG 3655 >seq37844 Length=1442 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | || || ||||| || ||||||||||| ||| ||| Sbjct 58 ATGCAGATCTTTGTAAAGACACTCACAGGGAAAACAATCACATTAGAAGTTGAACCTTCG 117 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || ||| || || ||||| ||||| || || |||||||| ||| Sbjct 118 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAA 177 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | | |||| || ||||||||||| || ||| Sbjct 178 CAACGTCTAATTTTCGCTGGTAAGCAGCTGGAGGAT 213 >seq52122 Length=5755 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTAT 18530 ||||||| || || ||||||| |||||| | || || |||| ||||| ||| Sbjct 5745 TTTCCATGGCAATTTGAAAACCATAAAAGCACCTGGCTTCGGTCACTTGAACCTCTTGTG 5686 Query 18531 AAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAA 18590 | || | || ||||| ||||||||||| ||||| |||| || |||||| ||||| || | Sbjct 5685 AGAACCGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCGAAGAATGCTAAGA 5626 Query 18591 CATATTTAATGAAATGTTTTTCATTATCCTT 18621 ||| || || |||||||| ||| ||| || Sbjct 5625 CATGCTTGATAAAATGTTTCTCACAATCTTT 5595 >seq49004 Length=3997 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATA 17929 |||||||| ||||| ||||| ||||| ||||| || ||||||||||| || | ||||||| Sbjct 2066 TATTCTCCTACTTTCTTCTCAAAGAAGTTTGTTTTGCCTTCCAATGAGATGAGATTCATA 2007 Query 17930 AAATCAAATGGATT 17943 |||||||||||||| Sbjct 2006 AAATCAAATGGATT 1993 >seq199373 Length=426 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATA 17929 |||||||| ||||| ||||| ||||| ||||| || ||||||||||| || | ||||||| Sbjct 180 TATTCTCCTACTTTCTTCTCAAAGAAGTTTGTTTTGCCTTCCAATGAGATGAGATTCATA 239 Query 17930 AAATCAAATGGA 17941 |||||||||||| Sbjct 240 AAATCAAATGGA 251 >seq54614 Length=296 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 155859 ATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGAT 155918 || ||||||||||| ||| ||| || | |||| ||| || ||| || || ||||| Sbjct 296 ATCACATTAGAAGTTGAACCTTCAGACACTATTGAAAATGTTAAAGCCAAGATCCAAGAC 237 Query 155919 AAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| || || |||||||| |||||| | | |||| ||| ||||||||||| || ||| Sbjct 236 AAAGAGGGTATTCCTCCAGACCAACAACGTCTAATTTTTGCTGGTAAGCAGCTGGAGGAT 177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728617539035600