Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq54613 163 6e-35 seq2515 138 2e-27 seq37844 127 4e-24 seq52122 111 3e-19 seq49004 107 4e-18 seq54614 98.7 2e-15 >seq54613 Length=3623 Score = 163 bits (180), Expect = 6e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | ||||| ||| | |||| ||| || ||| || || ||| Sbjct 2672 ATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 2613 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || ||||| || |||||||| || || | |||||||| || Sbjct 2612 GAAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGA 2553 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| ||||||||| |||| ||| || | ||| Sbjct 2552 GGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCA 2493 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||||||||||||||| || | |||||| | ||| ||||||||||| Sbjct 2492 ACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTT 2440 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| ||||| | ||| | ||| | || | ||||| |||||||| ||| Sbjct 3575 ATGCCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCA 3516 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||| || |||| || ||||| |||||||||||||| | | ||| ||||||||| Sbjct 3515 GATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 3456 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| |||||| ||||||||| || | ||| || | ||| Sbjct 3455 GGGATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCA 3396 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| ||| || ||||| || || | ||| || | ||| |||||||| Sbjct 3395 ACTTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 143 bits (158), Expect = 5e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || ||||||| ||| || |||| || ||||| |||||||||||||| | | | Sbjct 3068 ATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGC 3009 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||||||||| || || ||||| ||||| |||||| ||||||||| || | | Sbjct 3008 TGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTA 2949 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| ||||||| ||| || ||||| ||||| | ||| || | ||| |||||| Sbjct 2948 TCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTTACAAAGATCTGC 2889 Query 192535 AT 192536 || Sbjct 2888 AT 2887 >seq2515 Length=4501 Score = 138 bits (152), Expect = 2e-27 Identities = 182/247 (74%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 192294 TTTTAGTTTAA-TAAT-ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTT 192350 ||| ||| ||| |||| ||| || | ||| || | || | ||| || || | || ||| Sbjct 3711 TTTAAGTATAAATAATTACCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTT 3652 Query 192351 AGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAA 192410 || || ||||||||||| ||||| ||| |||| || | || |||||||||||||| || Sbjct 3651 TGA-ATGTTATAATCAGACAATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAA 3593 Query 192411 TCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 192470 || || || || ||||| || ||||| |||||||| || ||| ||||||||| || Sbjct 3592 TCGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAAT 3533 Query 192471 AGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATAT 192530 || ||| || | ||| || || || |||||||||||||| || | || || | || || Sbjct 3532 AGTATCAGAGGCTTCCACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAAT 3473 Query 192531 CTGCATT 192537 |||||| Sbjct 3472 TTGCATT 3466 >seq37844 Length=1442 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | |||||||| | ||||| |||||| ||| || || ||| Sbjct 515 ATACCACCACGAAGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCA 456 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||| || || || ||||| | | ||||||||| || Sbjct 455 GACAGGGTGCGGCCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGG 396 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || ||| || ||||| |||| || | | || Sbjct 395 GGAATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCC 336 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| |||||||||||| ||||| | ||| |||| ||| |||||||| Sbjct 335 ACCTCTAAAGTAATGGTTTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq52122 Length=5755 Score = 111 bits (122), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 50127 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGA 50186 ||||| ||| |||||| || |||||||| |||||| || ||||| | ||| Sbjct 5755 GAATGGACATTTTCCATGGCAATTTGAAAACCATAAAAGCACCTGGCTTCGGTCACTTGA 5696 Query 50187 ACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAG 50246 || || |||| || || || || |||||| |||||||||||||| ||||||||| Sbjct 5695 ACCTCTTGTGAGAACCGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCGAAG 5636 Query 50247 AATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAA 50300 |||||||| || | || ||||||||||| ||| ||||||||| | |||||| Sbjct 5635 AATGCTAAGACATGCTTGATAAAATGTTTCTCACAATCTTTTAATGTCTCCCAA 5582 >seq49004 Length=3997 Score = 107 bits (118), Expect = 4e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| |||||||| |||| |||||| || ||||| ||||| ||||| | |||| |||| Sbjct 311 CCTCATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 252 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | | |||||||||||| ||||| || | || || ||||| ||||| || |||||| | Sbjct 251 TCAACCAAAATATTGAAGCAAAGCTGCCCGAGAAAAATATTCCCTCAACCGCCGCAAAAG 192 Query 49966 CTATTATTCTTGCTCCAAA 49984 | ||||| | | || |||| Sbjct 191 CGATTATACGTTCTGCAAA 173 >seq54614 Length=296 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||| ||||| ||||| || || ||||||| |||||| ||||| || || Sbjct 103 ATACCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCG 162 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || ||||||||||| |||| | ||||| || || Sbjct 163 GCGAGCGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGGTCTGGA 222 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || ||| ||||| |||| ||||| | ||| Sbjct 223 GGAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAAGGTTCA 282 Query 192487 ACTTCTA 192493 ||||||| Sbjct 283 ACTTCTA 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979992807535350