Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq54613 136 7e-27 seq2515 132 9e-26 seq52122 120 5e-22 seq55701 114 2e-20 seq54614 104 4e-17 seq49004 104 4e-17 seq37844 95.1 2e-14 seq110694 86.0 1e-11 >seq54613 Length=3623 Score = 136 bits (150), Expect = 7e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || | ||||| ||| | |||| ||| || || || || || Sbjct 2672 ATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCA 2613 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || ||||| || ||||||||||| || | ||||| || || Sbjct 2612 GAAAGTGTACGGCCATCTTCTAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGA 2553 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| ||||||||| |||||||| || | ||| Sbjct 2552 GGAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGCTTCA 2493 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | ||||||||||||||| || | |||||| | || ||||||||||| Sbjct 2492 ACTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTGACAAAAATCTGCATTTT 2440 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| || || | ||| | ||| | || | ||||| ||||||||| || Sbjct 3575 ATGCCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCA 3516 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || ||||| ||||||||||| || | | ||| || |||||| Sbjct 3515 GATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGT 3456 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| |||||| ||||||||| || ||||| || | ||| Sbjct 3455 GGGATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCA 3396 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| || ||||| || || | ||| || | || |||||||| Sbjct 3395 ACTTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 120 bits (132), Expect = 5e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| |||||| || || |||| | || | || || ||||| ||||||||||| Sbjct 3077 TCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAG 3018 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || | | ||| || |||||||| || || ||||| ||||| |||||| ||||||||| Sbjct 3017 ATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTT 2958 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 || ||||| || | ||| ||||||| ||| || ||||| ||||| | ||| || | Sbjct 2957 TCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTTACA 2898 Query 172059 AATATCTGCAT 172069 || |||||||| Sbjct 2897 AAGATCTGCAT 2887 >seq2515 Length=4501 Score = 132 bits (146), Expect = 9e-26 Identities = 171/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 171837 ATAAT-ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATA 171895 ||||| ||| || | |||||| | || | ||| || || | || || ||| ||||| Sbjct 3700 ATAATTACCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTATA 3641 Query 171896 ATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTC 171955 ||| || || | ||| | || || | || ||||||||||| || |||| || ||||| Sbjct 3640 ATCAGACAATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTC 3581 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 ||||| || ||||| |||||||| || ||| ||||||||| |||||||| || | Sbjct 3580 TGGTGGAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGGC 3521 Query 172016 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||| || || || |||||||||||||| || | || || | ||| || |||||| Sbjct 3520 TTCCACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATT 3466 >seq52122 Length=5755 Score = 120 bits (132), Expect = 5e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 39429 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGA 39488 ||||| ||| |||||| || |||||||| |||||| ||| ||||| | ||| Sbjct 5755 GAATGGACATTTTCCATGGCAATTTGAAAACCATAAAAGCACCTGGCTTCGGTCACTTGA 5696 Query 39489 ACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAG 39548 || || |||| || || || || |||||| |||||||||||||| ||||||||| Sbjct 5695 ACCTCTTGTGAGAACCGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCGAAG 5636 Query 39549 AATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAA 39602 |||||||| |||| || ||||||||||| ||| ||||||||| | |||||| Sbjct 5635 AATGCTAAGACATGCTTGATAAAATGTTTCTCACAATCTTTTAATGTCTCCCAA 5582 >seq55701 Length=1651 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || |||| ||| | || ||||||| ||||| |||||| || || Sbjct 67 ATCCCACCTCTCAGACGTAGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCA 126 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || ||| | || || | || || ||||||||||| | ||| || || || || Sbjct 127 GATAGAGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGG 186 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || |||||||| || ||||| || ||||| || ||||| || | ||| Sbjct 187 GGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCC 246 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | |||||| || || || || | ||| || | || || |||||| Sbjct 247 ACTTCCAAAGTAATAGTCTTGCCTGTAAGTGTCTTTACAAAAATTTGCATT 297 >seq54614 Length=296 Score = 104 bits (114), Expect = 4e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||| || || ||||| || || ||||||| |||||| |||||| || || Sbjct 103 ATACCTCCTCGGAGACGCAATACCAAGTGCAAAGTAGACTCTTTCTGAATATTGTAGTCG 162 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||| || |||||||||||||||| | |||||||| || Sbjct 163 GCGAGCGTACGACCATCCTCCAGCTGCTTACCAGCAAAAATTAGACGTTGTTGGTCTGGA 222 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || || ||| ||||| ||||| ||||| | ||| Sbjct 223 GGAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAAGGTTCA 282 Query 172020 ACTTCTA 172026 ||||||| Sbjct 283 ACTTCTA 289 >seq49004 Length=3997 Score = 104 bits (114), Expect = 4e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 39150 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 39209 || |||||||| |||| |||||| || ||||| ||||| ||||| | |||| ||||| Sbjct 309 TCATCCCTAGAAATAAGTTCATTGCTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTC 250 Query 39210 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCT 39269 | |||||||||||| ||||| || | || || ||||| ||||| || |||||| || Sbjct 249 AACCAAAATATTGAAGCAAAGCTGCCCGAGAAAAATATTCCCTCAACCGCCGCAAAAGCG 190 Query 39270 ATTATTCTTGCTCCAAA 39286 ||||| | | || |||| Sbjct 189 ATTATACGTTCTGCAAA 173 >seq37844 Length=1442 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | |||||||| | ||||| |||||| || || || || Sbjct 515 ATACCACCACGAAGACGAAGCACTAAATGCAGAGTAGACTCTTTTTGGATGTTGTAGTCA 456 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | ||| || || || || || | | |||||| || || Sbjct 455 GACAGGGTGCGGCCATCTTCTAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGG 396 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || ||| || ||||| ||||| || | | || Sbjct 395 GGAATACCCTCCTTGTCTTGGATCTTAGCCTTAACATTTTCAATAGTGTCGGCTGGCTCC 336 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| |||||||||||| ||||| | ||| |||| || |||||||| Sbjct 335 ACCTCTAAAGTAATGGTTTTCCCAGTAAGTGTCTTAACAAAAATCTGCAT 286 >seq110694 Length=236 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || || ||||| || ||||| | || || |||||||| || Sbjct 52 ATTCCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCA 111 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || | ||| || ||||||||||| | ||||||||||| || Sbjct 112 GACAATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGA 171 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || || || ||||| || ||||| || | ||| Sbjct 172 GGAATACCTTCTTTGTCCTGAATCTTTGCCTTAACATTTTCGATTGTATCAGAAGCTTCC 231 Query 172020 ACTTC 172024 ||||| Sbjct 232 ACTTC 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901111075177800