Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq38744 159 1e-33 seq7548 140 1e-27 seq40558 131 5e-25 >seq38744 Length=1884 Score = 159 bits (176), Expect = 1e-33 Identities = 342/500 (68%), Gaps = 16/500 (3%) Strand=Plus/Minus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||||||||| ||||||| | ||| ||| |||||| || || ||||||| || || Sbjct 1532 CCTATCAAATCTACCAGGCCTTAATAAGGCTTTGTCTAAAATGTCCACTCTGTTAGTAGC 1473 Query 288909 TGCCAATACAACAATAGATTCGGT-TTGC-TTAAATCCATCCATACTTGTTAAAATTTGA 288966 || ||||| |||| | || | | ||| ||||| |||||||| | || || ||| Sbjct 1472 AGCTAATACTACAACA--TTGGTTGTTGTATTAAAACCATCCATTTCTACTAGAAGCTGA 1415 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA--TCACCCGAATCGCTCCttt 289024 ||||| || | ||| ||| || ||||| || || || || ||| | | Sbjct 1414 TTAAGAGTATTTTCTTGTTCTGAATG---ACCTCCAAAACTTCTACC---TC-CTC-TCT 1363 Query 289025 ttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA 289084 || ||||||||||||| ||||| |||||||| | | ||| |||| || || | || | Sbjct 1362 TTCTACCAACAGCATCTATTTCATCAATGAATAATATACAGGGAGCATGTTTCCGAGCCA 1303 Query 289085 TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAG 289144 | | || | || || || | || | |||| ||||||| ||||||||| ||| || | Sbjct 1302 TAGAGAACATATCCCTGACTCTAGAGGGACCAACACCAACAAACATTTCTAAAAACTCTG 1243 Query 289145 AAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || | |||||| |||||| | ||||| || || || ||| || | || | ||| | Sbjct 1242 AACCAGATACTGTAATGAAGGGAACATTAGCCTCTCCAGCTGTCGCTTTGGCTAAAAGAG 1183 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | ||||| || ||||| ||||| ||| | | |||| || || | ||| || || || Sbjct 1182 TTTTACCAGTCCCAGGGGGTCCTGTTAACAAAGCTCCTTTAGGAATTTTAGCTCC-TAAG 1124 Query 289265 AC-TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 | |||| | || ||| |||| ||||| | ||||| |||| || |||| ||| || Sbjct 1123 TCAATATACTGCTGAGGATTCTTCAAAAAGTTTACAAATTCCATAATTTCAATTTTAGCT 1064 Query 289324 TCATCACATCCTGCTACATC 289343 || ||||| || || ||||| Sbjct 1063 TCCTCACAACCAGCAACATC 1044 >seq7548 Length=2633 Score = 140 bits (154), Expect = 1e-27 Identities = 626/976 (64%), Gaps = 38/976 (4%) Strand=Plus/Minus Query 155399 AAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCT 155458 |||||| || || | |||||||| |||||||||| || || ||| | ||| | Sbjct 1523 AAATGTATCTGCCATTCCCTGAACACCAATACCGATAGGCCGGTGCTTCATATTTGAAGT 1464 Query 155459 GCTTGTCTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---GTAA 155514 ||| |||| | || ||||| || |||||||| | || ||||||||| || | Sbjct 1463 TTTTG-CTTCAGGGACAGGATAAAAGTTAACATCAATGACTTTGTTTAAATTTTGAGTGA 1405 Query 155515 CCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAA 155574 | | | || || | ||| |||||| | | | |||| |||| ||| |||| Sbjct 1404 CAATT---TTTGTGATTTCTTTTAATTTTTTAAAATTAAATTGCTTATGTTCA---ACAA 1351 Query 155575 ACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATT 155634 |||| ||| | || || || ||||| ||||| || || | || |||||| Sbjct 1350 ACATGTTAAGTGCTATGGAAGCAAGATTGCATACTGCCACTTCATCTTCTGAAGTGTATT 1291 Query 155635 CTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATT 155694 |||| |||| ||| || || || || || ||||| | |||||| || ||| | Sbjct 1290 GCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTCTTTTGATTACTCT 1231 Query 155695 TACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCA 155754 | ||||||||||||||||| || | |||||||| || || ||||||| || || || | Sbjct 1230 TCCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTA 1171 Query 155755 GAAT---CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACT 155811 ||| ||| ||| | || | || | | ||| || | ||| ||| | Sbjct 1170 TAATTGACTT---CCATAACTCTTGAGCTCTGACTTGTTTTATAAATCGTTTTTCTTTTT 1114 Query 155812 CATATTT--CATATACAGCGTTCGGTAA--TCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||||||| |||||| |||| || ||||| || || || ||| || ||||| Sbjct 1113 CATATTTGGCATATA----GTTCTTCAAACTCCTCTCCATAGCAGTCAGCGAGACCAGGA 1058 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTC--CATAAATA 155925 || | || || || | || ||||| || || || || || || |||||| | Sbjct 1057 CAGTCATGAGGACACATTAGACTCCAAACTTCAT--CCTTTTCTACTCTTTTCATAAACA 1000 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGA 155984 ||| ||| | |||||| || || || || || | || || | || ||| Sbjct 999 GATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCTGTG- 941 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||||| || |||||||| || || || | ||| ||||| | || || ||| Sbjct 940 TTCTTCCTTAAATCTAAGAACTCAAATATGTCTGCATGCCAAGGCTCTAAGTAAATTGCA 881 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || ||| | ||| ||||| ||||||||||| | ||||| || || | || Sbjct 880 AATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACT 821 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | | ||| || | | |||||| || ||||| || || |||| ||||| | Sbjct 820 CTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATATAAGAACCC--T 763 Query 156162 GAGCGAACATT--ATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 | || || ||| |||||| || || ||||| | ||||||||||| ||| | Sbjct 762 GGGCTCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGATTTAGAAATTAAAGCAC 703 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 ||| |||| ||||| ||||| |||||||| ||| |||| ||| | || || ||| Sbjct 702 ATTGTTTTAAAGTATCAAAAATGCCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAGC 643 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | || || || ||||| | || ||| |||||||| ||||||| ||| Sbjct 642 AGGAGGAAAGCTGTGGCCGCGGTGTAGCTGCTGAGAACAGTGTAGGGCTTGCATGTGTAA 583 Query 156340 AATACTTATTAGACAT 156355 |||| || | ||||| Sbjct 582 AATATTTCTCTGACAT 567 >seq40558 Length=3576 Score = 131 bits (144), Expect = 5e-25 Identities = 194/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| ||||||||||||||||||||||||||| || |||||||| || ||| Sbjct 1976 TCCATAGCCTTTATTAAACGACGCTGAATATAACCAGTTTCAGCAGTTTTTACCGCAGTA 2035 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| ||||||| ||||||||||| || | | ||| ||| | || Sbjct 2036 TCAATGAGACCTTCACGACCTCCCATAGCATGAAAATAAAACTCGGAAGGTGTCAAGCCG 2095 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | || | || |||||||| | | || || || ||||||| ||| | Sbjct 2096 GCAAGGTATGAATTTTCGACGAAACCTCTAGATTCTGGACCGTAATCGTC---TTTGATG 2152 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || |||| || || || | | ||| | || ||||||||||| ||||||||||| Sbjct 2153 AAATGAGGCAATGTTCTTTTACGAAAACCGAAAGGAATACGCTTTCCTTCAACGTTCTGT 2212 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||| || | ||| | ||| || || || Sbjct 2213 TGCCCCACACAAGCAATAACCTGTGAGATGTT 2244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1465109156106717