Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq121238 122 6e-23 seq54613 113 3e-20 seq55701 107 1e-18 seq2515 104 2e-17 seq37844 86.0 4e-12 >seq121238 Length=2101 Score = 122 bits (134), Expect = 6e-23 Identities = 771/1223 (63%), Gaps = 44/1223 (4%) Strand=Plus/Plus Query 5328 GTTGCCCAGACCTCGATTCATGACATTCAGAAGGTCCCCGTTGTCGGCGTCGATCTCCCA 5387 |||||| ||||| |||||| ||||||| || || ||||| ||||||||||| ||||| Sbjct 167 GTTGCCGAGACCCATGTTCATGGCATTCAGTAGATCACCGTTATCGGCGTCGATTTCCCA 226 Query 5388 CGCAAACAATCCACCCAGATTATTCTGCAGTACGTACTTAGCCTTAGCTTCGACGGATCG 5447 ||||| | || || || || || | ||| |||||| |||| | || |||| Sbjct 227 AGCAAAGAGACCGCCTAGCTTGTTATTTCTTACATACTTACCCTTCTCAATAACTGATCT 286 Query 5448 ATGGTCGTCGTAACTGACGACGTCGACTCCAACCTTACCGTCCCGGTACGCAAAGGCCGC 5507 | | || || | || | ||| |||| | | ||| ||| || | || Sbjct 287 AGCATTATCATAGGTTACAAGGTC---TCCAGT-TGATGGTCTGAAGACGTAAGGT--GC 340 Query 5508 GTCGGCGACGAAGTCGTA------CTCAAAATTG---TAATCGACAGAACCGGCTATGTT 5558 | |||||| |||||| ||| | ||| | | | || | ||| || | Sbjct 341 TTGGGCGACATTGTCGTAATGGAACTCCCACTTGCCTTGAGCAACTTCATTGGCAATTTC 400 Query 5559 TCTGTAATCCACCACACCGTCTTCCCAAGTGCCTGCAATCTTGTCG-GTCGCCACACCGG 5617 ||||| || ||||| ||||||| |||||| || | | ||| || || || | Sbjct 401 CCTGTAGTCGACCACTCCGTCTTGCCAAGTACCCTTGA-CAGGTCCAGTAGCGTTGCCTG 459 Query 5618 TGAATACATTGTTGTTCACCTGGTCGTGCACTCCGGACCACCCACGACCGTACATGGCTA 5677 |||| |||||||| | | || || ||||| | ||| |||||||| |||||||| | Sbjct 460 TGAAGGGATTGTTGTCTTCGTAATCATGAACTCCAGTCCAACCACGACCATACATGGCAA 519 Query 5678 CTCCCACAATTAGCTTCCTCGACTCGACGCTCTGATTTAGCAGACGCCTGACGGAAAAAT 5737 | || || | | |||| | | | || | ||| || || | || || | Sbjct 520 CACCTACTACAATCTTCTTAGGATTCACTCCCTGTGCTAACAAGTATTTTACTCCGAAGT 579 Query 5738 CGGTCGTGTACGTTTCGCCTGGGTTCCACGATGGAGCGAACAGAGGTGTCTGGTGTCCCA 5797 | | ||||| ||||| |||||||| | || ||| ||| ||||| || ||||| | Sbjct 580 CAGAAGTGTAAGTTTCCTTGGGGTTCCATGCAGGCGCGTACAATGGTGTTTGATGTCCAA 639 Query 5798 GATCCGTCAAC-GACCAGGCACCCTTGTAATCGTACGTCATGACAAATATGTGATCAAGG 5856 || ||| ||||||||||| ||| | ||||| |||| | || || ||||| | Sbjct 640 GAGTA-TCATTTGACCAGGCACCTTTGAAGTCGTAACTCATCAAGAAAATATGATCCATA 698 Query 5857 TATTTTTGTGCGGTGGCGTAGTCGACGACGTCGATCTTGTCGTGTCCCGCGCCGACGGCG 5916 || ||||| || || |||||| || || | ||| || || || |||| | || Sbjct 699 TAATTTTGAGCCTTGCTGTAGTCAACAACTTGGATTTTATCCCACCCAGCGCTAATAGCA 758 Query 5917 CTCGTCAACT-GTAGCCGTCTACCCCGCTTCTCGCCCAACTCATCAAGCATCACGCGAAG 5975 || || | ||| | |||| ||| | | ||||| |||||| | || | Sbjct 759 GAAGTTAATTCGTATTTCT-TACCATTCTTAGCTGAGAGTTCATCGAGCATCTCACGTAA 817 Query 5976 TTCCCGCAGCAAAAGAGTGTAGGTGTTGCGATCCACCTCGGCATTACCCAACACAGAATT 6035 ||| || |||| || | | ||| || | | | || | ||| || Sbjct 818 TTCTTTCATCAAACTTACATAACAATCACCATCT---TCTGGACTCCCAAGGTCAGGGTT 874 Query 6036 GGCACCCTTTCCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCAAAGAACTTCCAGGT 6095 || || || ||||| || |||||||| ||||| || || || || ||||| ||||| || Sbjct 875 AGCGCCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGT 934 Query 6096 CTCCAGAAACTCGCGGACGCTTGTGAC-GAACACCTCACG----CTTAGA---GTCATCG 6147 |||||||| ||| |||| | ||| || | |||||| |||| || Sbjct 935 TAAAAGAAACTCCTTGAC-----TGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACG 989 Query 6148 TTCATGAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACCGTCAAC 6207 | ||| || ||||| | ||||||||| || || || || || | | |||| Sbjct 990 AAAAAGAAG---AATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAA 1046 Query 6208 GAGGGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACTCTTCGTTG 6267 ||| | |||||| | ||||| |||||||| || || ||||| ||| || Sbjct 1047 TCGGGTCGGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTC 1106 Query 6268 TACGCCTCAACACCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTTACC 6327 | | | ||| | ||||||||||| || || ||||| || || || || Sbjct 1107 CATGAAGACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACT 1166 Query 6328 TTGAAGTCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAG--GAATTGGGAATCT 6385 ||||| || ||||| || || ||| ||||| || | || | || | |||| Sbjct 1167 TTGAAATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCG--ATCT 1224 Query 6386 GCTTGAGGGCGTCGTTTATGCCGCTACCACCACAAATTGGAATGAACCCGTACAGCAGGT 6445 || | | ||| || || ||| ||| || |||||||||||||| ||||| || || | Sbjct 1225 CTTTTAAGCTGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGAT 1284 Query 6446 GCGTCAGATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACT 6505 | || ||||||||||| |||| || | || || | || ||| || ||||| | Sbjct 1285 GAGTAAGATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATAAACACCCCATT 1344 Query 6506 CCACGAAATACGCACCGACGACT 6528 | |||||||| ||||| || ||| Sbjct 1345 CTACGAAATAAGCACCCACAACT 1367 >seq54613 Length=3623 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| ||||| |||| |||| || || ||||| |||||||| ||| Sbjct 3572 CCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGAT 3513 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || | |||||| || || ||||| || || ||||| || | || Sbjct 3512 AGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 3453 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| ||||| | ||||| ||| || | | || | ||| ||| || || Sbjct 3452 ATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAACT 3393 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || || || || || || || |||||||||||||||||||| Sbjct 3392 TCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCAT 3346 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || ||||| || ||||| ||||| |||| |||| || | |||||| || || ||| Sbjct 3077 TCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAG 3018 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || || ||||| || | || | ||||| ||||| | ||||| ||| || | Sbjct 3017 ATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTT 2958 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| ||| || || || | || || || || || ||||| ||||||||| Sbjct 2957 TCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTTACA 2898 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 2897 AAGATCTGCAT 2887 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || | ||||| |||| |||||| || ||||| |||||||||| | | || |||| Sbjct 3329 AGTACTAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGATAAGGTACGGCCATCT 3270 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||||||||| || |||||||| || || || || ||| | || | ||||||||||| Sbjct 3269 TCCAGTTGCTTGCCTGCGAAGATAAGACGCTGTTGATCTGGAGGAATACCCTCCTTGTC 3211 >seq55701 Length=1651 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTG-AATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 |||| ||||| | | ||| || | ||| || | || | ||||||||||| |||||||| Sbjct 296 TTCCACCCCTAAGGCGCAGCACTAAGTGCAAAGTTGAT-TCCTTCTGAATATTATAGTCT 354 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || | | ||| |||| || ||||||||||||||||| || |||| ||| || ||| | Sbjct 355 GACAATGTACGCCCATCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGA 414 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | ||||| ||||| | || ||| || ||| | || | ||| || || Sbjct 415 GGAATGCCCTCTTTGTCCTGAATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCC 474 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || | || ||||| || || || | ||| ||||| ||||| |||||||| Sbjct 475 ACTTCCAATGTGATGGTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCATGAT 527 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || || |||||||| || ||||| ||||| |||| |||| Sbjct 85 AGTACCAGGTGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCATCT 144 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || || || |||| |||||| ||| | || | ||||| || || Sbjct 145 TCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCC 204 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || || | | || | ||| || || || || | || || ||| Sbjct 205 TGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTC 264 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||||||||| || ||||| Sbjct 265 TTGCCTGTAAGTGTCTTTACAAAAATTTGCAT 296 >seq2515 Length=4501 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 34743 AATCATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTAT 34802 ||| ||| ||||| | | | ||| || || || | ||| ||||| |||||||||| Sbjct 3701 AATAATTACCTCCGCGAAGTCGCAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTAT 3642 Query 34803 AGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGT 34862 | || || | | || |||| || || ||||| || || ||||||| ||||||||||| Sbjct 3641 AATCAGACAATGTACGTCCATCTTCTAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGT 3582 Query 34863 CTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGG 34922 || | || | || ||||| || | || || ||| || | | || | ||| || Sbjct 3581 CTGGTGGAATACCTTCCTTATCTTGGATCTTAGCTTTTACATTTTCAATAGTATCAGAGG 3522 Query 34923 CCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || |||| ||| ||||| || ||||| |||||||| || || || ||||| Sbjct 3521 CTTCCACCTCAAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 3467 >seq37844 Length=1442 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| |||||||| || ||||| | || | || |||| ||||| ||||| || ||||| Sbjct 249 CTCTTTCTGAATATTGTAGTCGGCGAGAGTACGACCATCCTCCAGCTGCTTACCAGCGAA 190 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || ||||| |||||| | || | ||||| ||||| | || || ||| || Sbjct 189 AATTAGACGTTGTTGGTCTGGAGGAATACCCTCTTTGTCTTGGATCTTGGCTTTAACATT 130 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || | || || || | || || || || || ||||| |||||||| Sbjct 129 TTCAATAGTGTCCGAAGGTTCAACTTCTAATGTGATTGTTTTCCCTGTGAGTGTCTTTAC 70 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 69 AAAGATCTGCAT 58 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| || || ||||| ||||| || ||| |||| |||| || |||||||| || ||||| Sbjct 477 CTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCTAGTTGCTTGCCTGCGAA 418 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || || || || ||| | || | ||||||||||| | || || || || Sbjct 417 GATAAGACGCTGTTGATCTGGGGGAATACCCTCCTTGTCTTGGATCTTAGCCTTAACATT 358 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || | ||| || || | || ||||| || || || || ||||| || Sbjct 357 TTCAATAGTGTCGGCTGGCTCCACCTCTAAAGTAATGGTTTTCCCAGTAAGTGTCTTAAC 298 Query 34966 AAAGATCTGCAT 34977 ||| |||||||| Sbjct 297 AAAAATCTGCAT 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324280728433679