Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq32923 262 3e-65 seq121238 170 2e-37 seq55701 100 2e-16 seq54613 93.3 3e-14 seq2515 91.5 1e-13 >seq32923 Length=5192 Score = 262 bits (290), Expect = 3e-65 Identities = 371/515 (72%), Gaps = 21/515 (4%) Strand=Plus/Minus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 || || |||| ||| | ||||||||||| ||||| |||||||||||||| ||||| || Sbjct 2017 AATGGCTTCTATTACCTAGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 1958 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 ||||| |||| | ||||||||| || || | || || ||| |||||||||| ||| Sbjct 1957 CTTATGAAATGGGTTGCGGGCGACGATCCCGCCCAGGACCACCAGCGGTGGGCGCCCCAG 1898 Query 103688 TGTCCGTTCCTGaaaaaaaCGGCTGCTGG---CGCGC----TGCC-CGCCGGCCTTGCGA 103739 || || || ||| |||| || || | || |||| ||| | || ||| Sbjct 1897 TGCCCCTTTCTGCGG----CGGCAGCCGGAATCCGGCAACGTGCCGCGCGAGTCT-GCGC 1843 Query 103740 TGGACGGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCGTCCACCAACGCCTGCGTG---- 103795 | ||| | ||||||||||||||| |||||| ||| | || ||||| | Sbjct 1842 CCGTCGGCCGCGACGAGTGCGGCGTGCGCGCGC--CCG--CGCCTACGCCCCCCGCTCCC 1787 Query 103796 CGCATGCCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTT 103855 |||||||||||||| | |||||| || | || ||||||||| | | | | | || Sbjct 1786 CGCATGCCCGGCCCTGTGCACCCGCGCTACGACTCCGAGGCGGCTCGCCTCCGCAGCTTC 1727 Query 103856 AAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTAC 103915 | || ||||| || ||| |||| ||||| || ||| | | |||||||| ||||||| | Sbjct 1726 AGCGACTGGCCTCGCAGTTTGAAGCAGAAGCCCGAGGAACTCGCCGAAGCGGGATTCTTC 1667 Query 103916 TACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGG 103975 ||||||||||| ||||||| || || ||||||||||| ||||| || || ||||| ||| Sbjct 1666 TACACCGGCCAGGGCGACAAAACTAAGTGCTTCTACTGTGACGGCGGCCTCAAGGACTGG 1607 Query 103976 GAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTG 104035 ||| |||| || | ||||||| | || ||||||| | || ||| ||||| ||||| Sbjct 1606 GAGAACGACGACGTGCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGGTGCGCCTACGTT 1547 Query 104036 CTACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 | || |||||||||| || ||||| || ||||| Sbjct 1546 CAGCTGGTCAAGGGCCGAGAGTATGTCCAGAAGGT 1512 >seq121238 Length=2101 Score = 170 bits (188), Expect = 2e-37 Identities = 639/988 (65%), Gaps = 27/988 (3%) Strand=Plus/Minus Query 29072 TGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCT 29131 ||| ||||| ||||||||||| || ||| | || || || || || | || | Sbjct 1358 TGCTTATTTCGTAGAATGGGGTGTTTATCCTAGGAAATTCCCTGTGGATCGTATACCTAT 1299 Query 29132 GCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAA 29191 || || || | ||||| | ||||| ||||| || ||||||||||| ||||| |||| Sbjct 1298 ACCTAATCTTACTCATCTACTCTACGGCTTCATTCCAATTTGCGGCGGTGACGGTATCAA 1239 Query 29192 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCG 29251 ||| | | ||| || |||||||| | || | || || ||||| | ||||| Sbjct 1238 TGACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCATTACAGCGATCTTGTAGCGGCCG 1179 Query 29252 TTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGG 29311 |||||||||||| | || || ||||| ||||| || |||||||||| |||| || Sbjct 1178 CGAGGATTTCAAAGTCTCAATCCATGATCCATGGGCAGCATTACAAAAACCACAAAGAGG 1119 Query 29312 CGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCT 29371 ||||| | ||||| || ||||||||||| || || || || | ||| | ||| | Sbjct 1118 ATTGTCTTCATGGAATGAACCCTACAAAGGCAATTTTGGCCAATTGATGTCTCTCAAACA 1059 Query 29372 GGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCC--- 29428 ||| || | | || ||||| || || || || || ||||| | | || || Sbjct 1058 AGCCCGACCCGATTTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCTGATCCATT 999 Query 29429 GTTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATT 29488 |||| |||| | || | | | | | || |||||| | || |||| || || Sbjct 998 CTTCTTTTTCGTTGACAAATCTAAGAGAACACG---ATTTGTGCAGTCAGTCAAGGAGTT 942 Query 29489 TCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAA 29548 ||| ||||| || || || || || || || || |||||||| || |||||||| Sbjct 941 TCTTTTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAA 882 Query 29549 AGGCGCCAACCC-GACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTAC 29607 |||||| ||||| ||| ||||| | | || || | || ||| | ||| Sbjct 881 AGGCGCTAACCCTGAC-CTTGGGA--GTCCAG-AAGATGGTGATTGTTATGTAAGTTTGA 826 Query 29608 TAAAGGAATTGCGCGCAATGATGGACGAGTTACAATTGCAAACGGGCAAAACGTACGAGT 29667 | || ||||| || | ||| | || || | | | | || || | ||||| | Sbjct 825 TGAAAGAATTACGTGAGATGCTCGATGAACTCTCAGCTAAGAATGGTAAGAAATACGAAT 766 Query 29668 TGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGC 29727 | || || || || | || || || || || ||| | ||| | || | Sbjct 765 TAACTTCTGCTATTAGCGCTGGGTGGGATAAAATCCAAGTTGTTGACTACAGCAAGGCTC 706 Query 29728 AAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACA 29787 |||| | | | ||| | || ||| | ||||| ||||| || ||||| || |||||||| Sbjct 705 AAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAAGGTGCCTGGTCAAA-- 648 Query 29788 CCGAT----TTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACTG 29843 ||| |||| | | ||||| | | |||||||| |||||||| || ||| Sbjct 647 -TGATACTCTTGGAC-ATCAAACACCATTGTACGCGCCTGCATGGAACCCCAAGGAAACT 590 Query 29844 TACAACACGGACCACGCCGTTAAGTTGCTCACGAAC-CAGGGCGTGGACCCGCGCAAAAT 29902 |||| | ||| || | ||| | || | | ||||| ||| | || || || Sbjct 589 TACACTTCTGACTTCGGAG-TAAAATACTTGTTAGCACAGGGAGTGAATCCTAAGAAGAT 531 Query 29903 TATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGA 29962 | | || || || |||||||| || || |||||||| || || || | || ||| || Sbjct 530 TGTAGTAGGTGTTGCCATGTATGGTCGTGGTTGGACTGGAGT-TC--ATGATTACGAAGA 474 Query 29963 CAACTAT---TTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGT 30019 |||| || || || |||| ||| |||| || || | || |||||| ||||||| || Sbjct 473 CAACAATCCCTTCACAGGCAACGCTACTGGACCTGTCAAGGGTACTTGGCAAGACGGAGT 414 Query 30020 TGTCGACTATCGCCAAATTGAAAACGAA 30047 |||||||| | |||||| || ||| Sbjct 413 GGTCGACTACAGGGAAATTGCCAATGAA 386 >seq55701 Length=1651 Score = 100 bits (110), Expect = 2e-16 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || || | |||||||| || ||||| | ||| ||| ||| Sbjct 297 AATGCAAATTTTTGTAAAGACACTTACAGGCAAGACTATTACTTTGGAAGTGGAAGCTTC 238 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || || ||| |||||||| ||| | ||| ||||| Sbjct 237 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 178 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||| |||||||||| ||| || || ||||| || |||||| || | | |||| Sbjct 177 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGC----ACTCTATCTGACT 122 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| ||||| || || ||||| |||||| |||| Sbjct 121 ACAATATTCAGAAAGAATCTACTTTGCACCTGGT 88 >seq54613 Length=3623 Score = 93.3 bits (102), Expect = 3e-14 Identities = 170/249 (68%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| |||||||||||||| | || || ||||||||||| | ||| || ||| Sbjct 2440 AAAATGCAGATTTTTGTCAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAAGCT 2499 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||||| | | | |||||| || ||| || || |||||| | || ||| Sbjct 2500 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 2559 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || || | | |||| ||| || || || | || || | | ||| | | |||||| Sbjct 2560 CAACAACGTTTGATTTTTGCTGGAAAGCAATTAGAAGATGGCCGTACACTTTCTGACTAC 2619 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAA 107792 ||||| |||||||||||||| | || | || || | ||||||| || || | Sbjct 2620 AACATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG----TATGCA 2675 Query 107793 AATATTTGT 107801 ||||||||| Sbjct 2676 AATATTTGT 2684 >seq2515 Length=4501 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| ||||| || | || || |||||||||||| | || ||| || Sbjct 3466 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTTGAGGTGGAAGCCTC 3525 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | |||||| ||||| ||||| ||||| | || || || Sbjct 3526 TGATACTATTGAAAATGTAAAAGCTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCA 3585 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | || | ||| ||||| ||||| || || | ||| || | || || || Sbjct 3586 GCAACGATTGATCTTTGCTGGTAAGCAGCTAGAAGATGGACGTACATTGTCTGATTATAA 3645 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAAT 107789 |||||||||||| || || ||||| | ||| || || | || || || ||| || Sbjct 3646 CATTCAAAAGGAATCCACATTGCATCTTGTGCTGCGACTTCGCGGAGGTAATTAT 3700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397147432363549