Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neruda_20aoede_20[genbank_20GCA_5F900068225.1_202017-04-25] 355,741 sequences; 337,370,441 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq121238 217 1e-51 seq54613 116 4e-21 seq55701 89.7 5e-13 seq110694 84.2 2e-11 >seq121238 Length=2101 Score = 217 bits (240), Expect = 1e-51 Identities = 465/684 (68%), Gaps = 22/684 (3%) Strand=Plus/Plus Query 19020 GGGTTAGCGCCATTGCCGCCTGGAAACTCCCAATCAATATCGACGCCATCGAAGAATTTC 19079 ||||||||||| ||||| || || ||||||||||| ||||| || ||||||||||||||| Sbjct 870 GGGTTAGCGCCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTC 929 Query 19080 CACGTTTCTAGATACTCTTGGACTGAATCGATAAA-CGTCTGCCGTACGATCTTGTCGTG 19138 || ||| ||| |||| | |||||| | | ||| ||| | | | ||| ||||| Sbjct 930 CATGTTAAAAGAAACTCCTTGACTGACTGCACAAATCGTGTTCTCTTAGAT-TTGTCAAC 988 Query 19139 CATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATG 19198 | | | | ||||| || | ||| ||||| || || || || || || | || | || Sbjct 989 GAAAAAGAAGAATGGATCAGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAAATC 1048 Query 19199 AGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 19258 || || |||| | ||| | ||||||||| ||||||||||| ||||| ||||| Sbjct 1049 GGGTCGGGCTTGTTTGAGAGACATCAATTGGCCAAAATTGCCTTTGTAGGGTTCATTCCA 1108 Query 19259 TGCGCTGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACT 19316 | | |||| ||| |||| ||||| |||| || ||||| ||||| || || | ||| Sbjct 1109 T--GAAGACAATCCTCTTTGTGGTTTTTGTAATGCTGCCCATGGATCATGGATTGAGACT 1166 Query 19317 TTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTT 19376 ||||| || | || ||| ||| || || || || |||| ||||||||| || | Sbjct 1167 TTGAAATCCTCGCGGCCGCTACAAGATCGCTGTAATGCTTGGAAACTGCCTTCGATCTCT 1226 Query 19377 TTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGC 19436 || | | |||||||| ||||| || ||||| || || | ||| ||||| | | ||| Sbjct 1227 TTTAAGCTGTCATTGATACCGTCACCGCCGCAAATTGGAATGAAGCCGTAGAGTAGATGA 1286 Query 19437 GACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCG 19496 | | || ||| | || | ||| || || || | | ||||| ||||||||||| Sbjct 1287 GTAAGATTAGGTATAGGTATACGATCCACAGGGAATTTCCTAGGATAAACACCCCATTCT 1346 Query 19497 ACAAAGTATGCACCTATAATCTTGTCCGAGCGCTTT--TCGAACCGTTTATTGTTTTCGA 19554 || || || ||||| | || ||| ||| || | ||| | ||| | ||||| ||||| Sbjct 1347 ACGAAATAAGCACCCACAA-CTTTTCC-AGAGGTTTGCTTGAATGGCTTATTTTTTTC-- 1402 Query 19555 GATAATCGTAGA--CGAGCGGTTCGAGATGCGATCCATCCGTGTCGGCCACGACAACTTT 19612 || ||| | | || || | ||| |||||| || || || ||||||| || Sbjct 1403 TCCCATTGTATATTCCAGGGGAGGTAAATGACTTCCATCGGTATCAGCGACGACAATTT- 1461 Query 19613 AACCGGTG----CGCTAGTCGAACAGCCGTCGACGTTGCACAGTTTCACAGTCATATCGT 19668 ||||| |||| | || || || | ||||| |||| ||| ||||| | || Sbjct 1462 ---CGGTGGGATCGCTTGAGCTGCAACCATCTTCATTGCAAAGTTCCACTGTCATTTGGT 1518 Query 19669 ACTTGCCGCCCTTAGTAACGGGAA 19692 | | || || |||| ||||||| Sbjct 1519 ATCTTCCACCTTTAGAGACGGGAA 1542 >seq54613 Length=3623 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||||||||| | ||||| || | ||||| || ||||||||||| || || || || Sbjct 3573 GCCTCCTCGCAGACGCAGTACCAGATGAAGGGTGGATTCTTTTTGAATATTATAGTCAGA 3514 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| ||||| | ||| ||||||||| |||| ||||| |||||||| || || Sbjct 3513 TAGTGTGCGACCATCTTCTAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 3454 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || |||||||| ||||| ||||| | ||| | || || | || ||| || Sbjct 3453 GATACCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATTGTATCAGAGGCTTCAAC 3394 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 ||| | ||| | || || || || | ||| ||||| || || |||||| || Sbjct 3393 TTCTAAAGTGATTGTTTTCCCTGTAAGTGTCTTTACAAAGATCTGCATACCT 3342 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137218 GATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCA 137277 ||||||||||| || ||||| || | ||||| ||||| | ||| ||||||||| Sbjct 3080 GATTCTTTTTGAATATTGTAGTCAGATAGTGTGCGACCATCTTCTAATTGCTTACCAGCA 3021 Query 137278 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC 137337 |||| ||||| |||||||| || || ||||| |||||||| ||||| ||||| Sbjct 3020 AAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACA 2961 Query 137338 TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTT 137397 | ||| | || || | || ||| ||||| | ||| | || || || || | ||| ||| Sbjct 2960 TTTTCAATTGTATCAGAGGCTTCAACTTCTAAAGTGATTGTTTTCCCAGTGAGTGTCTTT 2901 Query 137398 ACGAATATTTGCATAGCT 137415 || || || |||||| || Sbjct 2900 ACAAAGATCTGCATACCT 2883 >seq55701 Length=1651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 ||||||||||| || || ||||| || | |||| || | ||||| || || || || Sbjct 100 GTAGATTCTTTCTGAATATTGTAGTCAGATAGAGTGCGTCCA-TCTTCAAGCTGCTTTCC 158 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 |||| | || || | ||||||||| || || ||||| ||||| || |||||| || Sbjct 159 AGCAAAAATAAGTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTT 218 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | ||| | || || | | ||| ||||| | ||| | |||||||| || | ||| Sbjct 219 AACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTAATAGTCTTGCCTGTAAGTGT 278 Query 137394 TTTTACGAATATTTGCAT 137411 ||||| || |||||||| Sbjct 279 CTTTACAAAAATTTGCAT 296 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||| ||||| || | || ||||| || || || || || || || ||| | | Sbjct 310 CGCAGCACTAAGTGCAAAGTTGATTCCTTCTGAATATTATAGTCTGACAATGTACGCCCA 369 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| ||||| || || || | || || | ||| ||||| ||||| ||||| |||||| Sbjct 370 TCTTCTAGTTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGAATGCCCTCTTTG 429 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||| ||| |||| | || | || || | | ||| ||||| | || | Sbjct 430 TCCTGAATCTTTGCCTTTACGTTCTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATG 489 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || ||||| || ||||||||||| |||||||| Sbjct 490 GTTTTCCCGGTTAAGGTTTTTACGAAGATTTGCAT 524 >seq110694 Length=236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||||||||| ||||| || | || ||||| || || || || || || | Sbjct 55 CCACCTCTTAAACGCAACACTAAGTGCAAAGTTGATTCCTTCTGGATATTATAGTCAGAC 114 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||||||||| || |||||| | ||||| | || || || ||||| Sbjct 115 AATGTGCGGCCATCTTCGAGTTGCTTTCCAGCAAAAATCAGCCTCTGTTGGTCTGGAGGA 174 Query 137305 ATGCCTTCTTTGTC 137318 || ||||||||||| Sbjct 175 ATACCTTCTTTGTC 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486371560861200